UFO01920.5prime Sequence
1146 bp (1018 high quality bases) assembled on 2008-11-05
> UFO01920.5prime
CAGTCGACATGACGGACGGCAGCCACTGGTTGAACTGGTGTCGCCTGTGC
GCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAATGAGAATTC
TCAGGGAAACTGGGACAATGTCCTGATAATGGCCATTCGCAAGTACTTCG
AAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGTGTACGGAG
TGCTATACGCTTATTAGCGAACTAATCGATTTTGCAGAGCATGTGACCAA
AGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGATGGGGACC
AGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGTGCGATGAC
GACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATGGAGTCCGA
TAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCCTTTGGCGG
AGACAAGCAGCCAAGAAATGGAAATATCGAAAAGGACAACAACAACCCAC
TTAATTCAAACCAAAAAGAACGTAGAAATGGAGATACCCAAGCAAGAATT
CATCGACTTAGGTCCCATTCTGTTGGAAAAGAACACAAGTCAACTGGACA
TGGAGGATGTGCTAGACGAACTGCCTCAGGAGGAACTATCGCAACCGCGC
CTCGACAGCACAACCTCTCCGGCCTCAATGGAGAATGATGTCAAATCAGA
AATGCTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGTAGATGGCC
AGCTAATGGATCTCGTCGCTGTGGCAACCACGCCAAATACTCTGGAATCA
ACTGCCGAGGAGAACGCCAAACGGGGTCGAATGGACTGCGAGAAATGTGG
CAAGGTCTACAGAAACCGCGCTTCATACGAGAAACACTTGGAACGCGAGT
GCCGCCGGATCGAGCGGCGTGTGAAAGTGGACAAAACAACAACAACCTGT
GATATTTGCACAAACGCTATCCTCCGCCACAGCGCTGAAGCTCCACAAAG
AGGGCATACCCCAGAATGTTCAAGCCATTATATCTGCGTGTTGCGGCCAG
CACCTGAAGACAATAACCGGCACTAAATGAACCAAGCTGGGTCCCACCGA
AGCCGTTCCCTCCGAAGTGCACCGCTCTGCAGGCGGACTAGAATCG
UFO01920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-RA | 1839 | CG17568-RA | 100..1228 | 9..1136 | 5215 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19180452..19181396 | 1101..159 | 4260 | 98.1 | Minus |
| 2L | 23513712 | 2L | 19181454..19181603 | 158..9 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:13 has no hits.
UFO01920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:30 Download gff for
UFO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1200 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:06 Download gff for
UFO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1200 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:45 Download gff for
UFO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1200 | 9..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:45 Download gff for
UFO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19180471..19181396 | 159..1082 | 98 | <- | Minus |
| 2L | 19181454..19181603 | 9..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:06 Download gff for
UFO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19180471..19181396 | 159..1082 | 98 | <- | Minus |
| arm_2L | 19181454..19181603 | 9..158 | 100 | | Minus |
