UFO01921.5prime Sequence
1095 bp (932 high quality bases) assembled on 2008-11-05
> UFO01921.5prime
CAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCTACGCCGAC
AACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCGCCCACCTA
CTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTCCAATTATC
AGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACTACTACAAC
AATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAACCCACCAC
CCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGCTGCTTCCA
TCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTCTGCTCACC
AATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTACACAACCGT
CGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCACCGCCAGCC
CCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGCCCAGCGCC
TCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCGCAGACGCA
GAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCACGCCCACCT
CTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGCCGGGGGAG
AAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATTGTGACAGC
CCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGAGACTTTGG
CATCAGATTGCAAAGACTCGTGACGCACCCGTCAGACGTACACCCGCTAC
CAGACCCTGGAGCTCGAGAAGGAGTTCCACTTACATAGATACATCACCCG
GCGTCGTCGCATCGATATCGCCAATGCCCTGAGCCTGAGCGACGGGCAGA
TCAGGATCTGGTTTCAAACCTACGATGAGTCGAGAGACGACCTGACGCTC
CGACATGCGTGCGCTACCCGGAGTGCGCCTGAGCAAGCCCGCACACGGAC
ATCGTGCATGCATGACACACAACCCCTACGTAGCATCAGTGTAGCGCAGT
CAGACATAGCCGGACATGCAACAGTATGTATGGAGAATACAGGTC
UFO01921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-RA | 1774 | CG2047-RA | 67..980 | 5..918 | 4435 | 99 | Plus |
| Scr-RB | 3987 | CG1030-RB | 1462..1586 | 789..913 | 250 | 80 | Plus |
| Scr-RA | 4140 | CG1030-RA | 1615..1739 | 789..913 | 250 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6864390..6865141 | 5..756 | 3745 | 99.9 | Plus |
| 3R | 32079331 | 3R | 6865286..6865450 | 754..918 | 705 | 95.2 | Plus |
| 3R | 32079331 | 3R | 6825521..6825645 | 913..789 | 250 | 80 | Minus |
| 3R | 32079331 | 3R | 16810190..16810323 | 916..783 | 235 | 78.4 | Minus |
| 3R | 32079331 | 3R | 6898418..6898521 | 886..783 | 205 | 79.8 | Minus |
| 3R | 32079331 | 3R | 16658997..16659055 | 830..772 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:24 has no hits.
UFO01921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:29 Download gff for
UFO01921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 63..998 | 1..933 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:59 Download gff for
UFO01921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 63..998 | 1..933 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:18 Download gff for
UFO01921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 63..998 | 1..933 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:18 Download gff for
UFO01921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6864386..6865141 | 1..756 | 99 | -> | Plus |
| 3R | 6865289..6865445 | 757..913 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:59 Download gff for
UFO01921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2690108..2690863 | 1..756 | 99 | -> | Plus |
| arm_3R | 2691011..2691167 | 757..913 | 95 | == | Plus |
