UFO01922.5prime Sequence
1039 bp (903 high quality bases) assembled on 2008-11-05
> UFO01922.5prime
CAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGGATAACGCG
GACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGCCAGACCAA
CGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCATGCGGGACA
CTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCACGCCCCAC
CTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGACGCGGAGCT
TTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGATCTTCGCG
ATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCTCACTGTCC
AGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCGCCGGCCAG
CTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAATGGCTCCG
GCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCACCGGCGGT
GTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAGCAGAACGT
GTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACATTCGCCGG
ACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTAAGTACATT
AAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCGCCCTCGCA
TCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAGGATGGCCA
ATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATGTCCGCTGT
ACGCACATCAGTGTGACGCACGCGGCAGATGCACAGATGCATGGCACGAC
TGCACGAACGTGCACACTGTGTATGCCGGAGCGTGCAACAGTCCTGATTA
CCCTGCTCTACGCACTCTACTGCTGTGCATCGCTGCTCGACGCGAAAGCA
CAGCACTGCGGTATGGCTGAATACACTTCAGGAAGTAACTTCAGCTAGCA
TGTATGTGTGTGCGTGTGACTGTGACGTGCGACATGGCA
UFO01922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH3B-RA | 1428 | CG2655-RA | 66..901 | 9..836 | 3965 | 98.9 | Plus |
| HLH4C-RB | 1424 | CG3052-RB | 563..632 | 559..628 | 215 | 87.1 | Plus |
| HLH4C-RA | 1424 | CG3052-RA | 563..632 | 559..628 | 215 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2680777..2681237 | 793..333 | 2290 | 99.8 | Minus |
| X | 23542271 | X | 2681334..2681658 | 333..9 | 1625 | 100 | Minus |
| X | 23542271 | X | 4645919..4645988 | 628..559 | 215 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:47 has no hits.
UFO01922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:34 Download gff for
UFO01922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 59..909 | 1..846 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:39 Download gff for
UFO01922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 59..909 | 1..846 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:47 Download gff for
UFO01922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 59..909 | 1..846 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:47 Download gff for
UFO01922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2680742..2681236 | 334..824 | 98 | <- | Minus |
| X | 2681334..2681665 | 1..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:39 Download gff for
UFO01922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2574775..2575269 | 334..824 | 98 | <- | Minus |
| arm_X | 2575367..2575698 | 1..333 | 98 | | Minus |
