UFO01925.5prime Sequence
1047 bp (962 high quality bases) assembled on 2008-11-05
> UFO01925.5prime
CAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATGAGGACGCC
GCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGCCGAGACGCTGCTGAT
ATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAACGAATCCG
CCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAGACCTACGCCTAC
ACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGACGATAATGTCTGCGCG
AAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGCCGCACTGG
GTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGATTCCTTCA
CTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCAAATACTCGACGATAT
CGGCACTAAACGCAGCTTACAATACGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCT
CATAACCCTTTACGGAAATAGGCCAGGTTTTCACGTAGCACGGCACATCT
GCGAATATATGTGTAGAAACTGACGGAAATCGTCGTGCTATCGCATCATG
AGCGAATGAATTCGTTTCAGATGCTCATGACAACGTGTACATGGGTG
UFO01925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..524 | 9..425 | 2025 | 99 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 71..425 | 1715 | 98.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 71..425 | 1715 | 98.9 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 9..72 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253275..18253457 | 253..71 | 870 | 98.4 | Minus |
| 3R | 32079331 | 3R | 18253041..18253214 | 425..252 | 855 | 99.4 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:34 has no hits.
UFO01925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:24 Download gff for
UFO01925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RA | 76..147 | 1..71 | 94 | -> | Plus |
| Rpb4-RA | 1827..2184 | 72..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:48 Download gff for
UFO01925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 99..529 | 1..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:38 Download gff for
UFO01925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 99..529 | 1..433 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:38 Download gff for
UFO01925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18255317..18255386 | 1..72 | 94 | | Minus |
| 3R | 18253041..18253212 | 254..425 | 99 | <- | Minus |
| 3R | 18253275..18253455 | 73..253 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:48 Download gff for
UFO01925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078763..14078934 | 254..425 | 99 | <- | Minus |
| arm_3R | 14078997..14079177 | 73..253 | 98 | <- | Minus |
| arm_3R | 14081039..14081108 | 1..72 | 94 | | Minus |
