UFO01927.5prime Sequence
1049 bp (501 high quality bases) assembled on 2008-11-05
> UFO01927.5prime
CAATCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGGCCAAGTTC
AAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGCCGCGGCAC
CATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGGCGTCGGTG
GAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACGGACGCTCC
CTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCCTCGCTGGC
TAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAATGGATATCA
TCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGCGGCTGCGA
CGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGCAACATCCT
GGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGCACTGAACA
GCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACACAAACATA
TCGCGACAGCTGTCAAGGGCCCCGTTTGGCGAGCTGGAAGACAGCGACAT
GGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCGCTCCAGCA
TCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCGGCTTTGCC
ATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGCCTGATTGA
CGGTCTGGCTGAGATCATATAGGACGACCTGTTCTACTGGCTGATCGACG
ACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGGTCGGCGAA
TTTACATTCTTGGGATGGTTGACGCTGTTCGAGACTATCTCTGCATGCGC
ATATATGGTCTCAAACGTGTGTCGGCGCATAGAAGGTCAACTGTATTCGC
TGCTGTTCGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAG
TGGTCTTAATCATAATCATAATCATAATCATAATGACAACTGCCTAAGAG
AATCCTGGTCATGACGTAGTGCATGAATTCGCTACCAGATAAAAAAACG
UFO01927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-RA | 1724 | CG33134-RA | 625..1525 | 8..908 | 4325 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6652188..6652643 | 453..908 | 2130 | 97.8 | Plus |
| 2R | 25286936 | 2R | 6649278..6649579 | 8..309 | 1480 | 99.3 | Plus |
| 2R | 25286936 | 2R | 6651985..6652132 | 305..452 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:27 has no hits.
UFO01927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:21 Download gff for
UFO01927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 531..1444 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:45 Download gff for
UFO01927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 618..1531 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:55 Download gff for
UFO01927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Debcl-RA | 618..1531 | 1..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:55 Download gff for
UFO01927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6649271..6649578 | 1..308 | 98 | -> | Plus |
| 2R | 6651989..6652132 | 309..452 | 100 | -> | Plus |
| 2R | 6652188..6652643 | 453..908 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:45 Download gff for
UFO01927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2536776..2537083 | 1..308 | 98 | -> | Plus |
| arm_2R | 2539494..2539637 | 309..452 | 100 | -> | Plus |
| arm_2R | 2539693..2540148 | 453..908 | 97 | == | Plus |
