UFO01929.5prime Sequence
1102 bp (988 high quality bases) assembled on 2008-11-05
> UFO01929.5prime
CAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCTATGCCAAG
CTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAGGCGCGCGA
CACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAAGGGATCGC
GCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTGAGATCAAG
ATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTGGACGTTTT
CGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGACACGGATC
TGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGGCGAACATC
AAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTGCATCTCAA
TTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGTCAACAGCG
ATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCTTCGGTTCG
CCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTATCGTTCGCC
CGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGATATGTGGG
CAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGTTCATGCCG
GGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACACTGGGAAC
ACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGACTATCTGC
AGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCACCGCCGCG
GGCAATGACTTGATCCATCTGATGCAACGCCTGTTTGCCATGAATCCGCT
GCGGCGTGTGTCCTGCCGCGAGGCACTGAGCATGCCGTATTTCGCTAACA
AACCGGCGCCCACAGTGGGTCCCAAGTTGCCAATGCCGTCGGCCATTCTG
GCCGCCAAGGAGGTGCCAATCCGCAAACGGCGACACGAAGCTGCGCTCAG
CGCAGCTTGTCGAGACTACGGTGAGGGCAATGATACCCGAAAACCGCTGC
AGTCGCAGGCTTCTAGACATTCGTTGGCGCCGGTCCAGTATTGCCTAATC
AA
UFO01929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-RA | 1448 | CG3319-RA | 90..1119 | 9..1032 | 4955 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5307800..5308760 | 1027..72 | 4510 | 99.2 | Minus |
| X | 23542271 | X | 5308829..5308894 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:10 has no hits.
UFO01929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:19 Download gff for
UFO01929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 35..1064 | 9..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:40 Download gff for
UFO01929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..1119 | 9..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:22 Download gff for
UFO01929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..1119 | 9..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:22 Download gff for
UFO01929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5307794..5308757 | 75..1032 | 99 | <- | Minus |
| X | 5308829..5308894 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:40 Download gff for
UFO01929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5201827..5202790 | 75..1032 | 99 | <- | Minus |
| arm_X | 5202862..5202927 | 9..74 | 100 | | Minus |
