UFO01935.5prime Sequence
958 bp (934 high quality bases) assembled on 2008-11-05
> UFO01935.5prime
CAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTTGCGGTTGG
AGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGTCACTTTCA
ACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTGTGCAATAT
TTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTATGCTACGTT
TTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTGTGTTGGTT
TATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTGGCTCGGCT
GTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGACAGTATCCT
GTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGCCAAAAGCT
GGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTGCATTCTGA
AGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCCATAAAAAT
CAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGCAGCGGACA
GGCGCTCGTCTACAATGGCATTTTGGATTGGACAAACAAGGCCTTTTTGG
TCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAGATGCTGAT
TTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAATTTATTTCT
TTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAATGGTATATC
GGATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATGTTGGTTGGA
GAAGAAATTTTGATATGGTCTTGGGAAACGGCGCTTCTGGATTTTTTTCT
CTCCAACGATCTCAAGTCCTCTTCCTACCGATGGCACTCAGTGGTCAGAG
AGAAGTGCAGCTTCTAGACATCGTTGCCCCGGGCCAGTAGCAGCACGACG
ACGACACC
UFO01935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4956-RA | 1038 | CG4956-RA | 77..965 | 9..895 | 4380 | 99.7 | Plus |
| CG17197-RB | 1958 | CG17197-RB | 429..531 | 403..505 | 215 | 80.6 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 429..531 | 403..505 | 215 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25777341..25778229 | 895..9 | 4330 | 99.7 | Minus |
| 3R | 32079331 | 3R | 25774839..25774941 | 505..403 | 215 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:41 has no hits.
UFO01935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:26 Download gff for
UFO01935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4956-RA | 77..976 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:01 Download gff for
UFO01935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4956-RA | 77..976 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:02 Download gff for
UFO01935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4956-RA | 77..976 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:02 Download gff for
UFO01935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25777341..25778229 | 9..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:01 Download gff for
UFO01935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21603063..21603951 | 9..895 | 99 | | Minus |
