UFO01938.5prime Sequence
1114 bp (1002 high quality bases) assembled on 2008-11-05
> UFO01938.5prime
CAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCCACAGCCAC
AGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCATAGCAGCAG
TCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCATGGTCGGTG
GCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGGGAAACACC
ACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCAGCGGCCCC
CACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCATGGCAACT
CCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTGGAAGCCAT
CACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTCATGGTCTG
GTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAAAATGCACA
ATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTACTCACCGAA
GGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGGGCTCTGCA
CATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAAGCCCAAGA
CGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCGGTGGAGGT
GGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCCGGTCCCAG
TGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCAGTTGTCGC
CCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACCAGTCACCA
TATCAATCGCATCCACACCACCCGCATCCTCATCCACATCATGTCCAGCT
GGCCGCCGCCACCTTGAGCGCCAAGTACGGTTTTGGTTCGCCACTGGAGT
TATCGCTGCCCCGCCTGCCGAATGCCTTTCCCGGCTCGCCCACTATCCAC
TGGATCCACGTTGGCCCTGGAACTAACAGGCGCGCCTCCAGCGATGTACG
CCGCTTCATCTACAACCGTGGCGATTTTCTGCGCTGATAGTCCGAACTCA
CCCTCCCCGCAGAGCAGCGTACCGCACTTCATTCTACGATGCTCAGTTCG
AAGTCCTCACAATT
UFO01938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21a-RB | 2335 | CG7345-RB | 395..1463 | 8..1068 | 4960 | 98.2 | Plus |
| Sox21a-RA | 2335 | CG7345-RA | 395..1463 | 8..1068 | 4960 | 98.2 | Plus |
| Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 366..595 | 520 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14106541..14107075 | 542..8 | 2675 | 100 | Minus |
| 3L | 28110227 | 3L | 14104424..14104888 | 1003..541 | 2100 | 98.7 | Minus |
| 3L | 28110227 | 3L | 14176684..14176918 | 600..366 | 485 | 80.4 | Minus |
| 2L | 23513712 | 2L | 8827031..8827270 | 372..611 | 375 | 77.1 | Plus |
| 3L | 28110227 | 3L | 14125085..14125194 | 475..366 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:55:27 has no hits.
UFO01938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:11 Download gff for
UFO01938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21a-RA | 1..1078 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:15 Download gff for
UFO01938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21a-RA | 388..1473 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:30 Download gff for
UFO01938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21a-RA | 388..1473 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:30 Download gff for
UFO01938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14104343..14104887 | 542..1074 | 96 | <- | Minus |
| 3L | 14106542..14107078 | 1..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:15 Download gff for
UFO01938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14097443..14097987 | 542..1074 | 96 | <- | Minus |
| arm_3L | 14099642..14100178 | 1..541 | 99 | | Minus |
