UFO01940.5prime Sequence
1100 bp (992 high quality bases) assembled on 2008-11-05
> UFO01940.5prime
CAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGACTCAGCAT
TACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGCGCCCGGAT
GAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACACCATGGATG
CGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCTTAGAGCTC
ACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCCAATCCTCA
ATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGCCGGATACA
CCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTCCCGGCTTG
GATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCACCAGCTCAA
GGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGAACCAGTTA
ATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGGATATTCAT
CATGGCGAAGAAGTCTGGCGCCCCTGGGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTG
CCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAA
TCAAACTGGTGAACTCACCCAGGATTGGCCTGAAACGAAAAACATATTTC
TCAATAACCCTTAGAAATAGCAGTTCACGTAACACGCCACATCTTGCGAT
ATTATGTGTAGAACTGCGGAATCGTCTTGTATTCTCGACCGAGAACGGTT
UFO01940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mdelta-HLH-RA | 1013 | CG8328-RA | 112..630 | 9..527 | 2595 | 100 | Plus |
| E(spl)m3-HLH-RA | 1305 | CG8346-RA | 210..382 | 33..205 | 235 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25997732..25998250 | 9..527 | 2595 | 100 | Plus |
| 3R | 32079331 | 3R | 26022032..26022204 | 33..205 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:19 has no hits.
UFO01940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:09 Download gff for
UFO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHmdelta-RA | 108..635 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:31 Download gff for
UFO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mdelta-HLH-RA | 108..635 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:24 Download gff for
UFO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mdelta-HLH-RA | 108..635 | 1..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:24 Download gff for
UFO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25997728..25998250 | 1..527 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:31 Download gff for
UFO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21823450..21823972 | 1..527 | 99 | == | Plus |
