UFO01941.5prime Sequence
1120 bp (997 high quality bases) assembled on 2008-11-05
> UFO01941.5prime
CAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTGATGTTTCG
GTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATGAAACGATT
GCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCAAAAGTCAT
CACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGGGGCGAGGG
CATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCCATTCCCAA
TGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGAAAGATTGC
AAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTACATACATTT
TTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCCTGGGACTA
CCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACTCCTCCGGC
AGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCAGTTCAGAG
CGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGCTGCAGTCC
CACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAGAATGGAGG
TTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCAAATCAAGT
GGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAAAACTTTGA
CGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCGCTGGAACA
TATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAACGAATGCG
GGAATGAATGGAAAACTCAGTGATTTGGAAAACAAGCACAAGTTGGTGTT
ATTGTGGGATGTGGATGTTGCTATTTACACGCAACACGACGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCTAATCATAATCAT
AATCATAATCATATCACAACTAGCGCTAGAAAATGCTGGGTCATGACTAG
TGCTTGGATTCCCACCAATAAAAACCGCCCGGGCGGCAACCGAGCGTTCT
GAACAAATTCCAGAATGGGAAGTTCGAGGTCTTTAATGAATCTATCAAAA
GGCTCTAGCGAACTCGAATT
UFO01941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lbl-RB | 1758 | CG6570-RB | 167..1048 | 9..890 | 4365 | 99.8 | Plus |
| lbl-RC | 1803 | CG6570-RC | 167..869 | 9..711 | 3515 | 100 | Plus |
| lbl-RA | 1855 | CG6570-RA | 167..869 | 9..711 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21433265..21433967 | 711..9 | 3515 | 100 | Minus |
| 3R | 32079331 | 3R | 21426925..21427104 | 890..711 | 805 | 98.9 | Minus |
| 3R | 32079331 | 3R | 21445093..21445425 | 703..374 | 550 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:48 has no hits.
UFO01941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:08 Download gff for
UFO01941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbl-RB | 135..1025 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:38 Download gff for
UFO01941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbl-RB | 158..1048 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:10 Download gff for
UFO01941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbl-RB | 158..1048 | 1..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:10 Download gff for
UFO01941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21426925..21427103 | 712..890 | 98 | <- | Minus |
| 3R | 21433265..21433973 | 1..711 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:38 Download gff for
UFO01941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17252647..17252825 | 712..890 | 98 | <- | Minus |
| arm_3R | 17258987..17259695 | 1..711 | 99 | | Minus |
