UFO01942.5prime Sequence
1089 bp (990 high quality bases) assembled on 2008-11-05
> UFO01942.5prime
CAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGATGTTGGCA
ACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGATCCGGATGA
CATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAACGGCTGCA
AGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACTTGCGCGAT
CCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAAATAACGCC
CGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGATGATATGA
AGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGGCACAGATG
GCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAACGCTGCGA
CAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGAGCCCATTA
TCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGAGCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACCTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACTGTTTAGGAAATAGCAGCTTT
TCACCGTAACACGCCACATCTGGCGATAATATGTGTAGAACTGCGAAATC
GTCTGCATTCATCGACGATGAAACGGTCAGTGCCCATGA
UFO01942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-RA | 770 | CG8117-RA | 69..555 | 8..494 | 2435 | 100 | Plus |
| TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 262..491 | 275 | 75.5 | Plus |
| TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 262..491 | 275 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15644290..15644776 | 8..494 | 2435 | 100 | Plus |
| 2L | 23513712 | 2L | 15059619..15059735 | 378..262 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:02 has no hits.
UFO01942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:07 Download gff for
UFO01942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:50 Download gff for
UFO01942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:23 Download gff for
UFO01942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:23 Download gff for
UFO01942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15644286..15644775 | 1..495 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:50 Download gff for
UFO01942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15538319..15538808 | 1..495 | 98 | <- | Plus |
