UFO01943.5prime Sequence
1109 bp (1013 high quality bases) assembled on 2008-11-05
> UFO01943.5prime
CAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGACCTATCAG
TACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGTGCCAGAAT
CAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCACCTTGGAGT
CCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCCTGGAACTT
ACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCACAAGCGGGC
TTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTCCGGCTACA
TCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGCCCGGCATG
AATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAGCGCCTCAA
TCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGCTCCACTCT
CCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTTCGCCAATC
TCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACCAGCCATTC
CCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAGCGAGGACG
AGGAGAACGTCTGGCGTCCCTGGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCAGCGGCATCAGCACCTTGTTCGCCTTGCGTATATATTTGCCCAT
GGTGAAACGGGGGGCGAAGAGTTGTCATATTGGCCACGTTTAAATCAACT
GGTGACTCCCCAGGATGCTGAACGAAACATATTCCATAGCGTTAAGGAAT
GGGCAGTAC
UFO01943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..707 | 9..623 | 3075 | 100 | Plus |
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 30..205 | 460 | 84.7 | Plus |
| E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 29..135 | 430 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25999943..26000557 | 9..623 | 3075 | 100 | Plus |
| 3R | 32079331 | 3R | 26005703..26005878 | 205..30 | 460 | 84.1 | Minus |
| 3R | 32079331 | 3R | 26037177..26037283 | 29..135 | 430 | 93.5 | Plus |
| 3R | 32079331 | 3R | 26022029..26022195 | 30..196 | 430 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:36 has no hits.
UFO01943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:05 Download gff for
UFO01943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHmgamma-RA | 78..700 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:57 Download gff for
UFO01943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mgamma-HLH-RA | 85..707 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:43 Download gff for
UFO01943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mgamma-HLH-RA | 85..707 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:43 Download gff for
UFO01943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25999935..26000556 | 1..622 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:57 Download gff for
UFO01943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21825657..21826278 | 1..622 | 99 | -> | Plus |
