UFO01945.5prime Sequence
1112 bp (1012 high quality bases) assembled on 2008-11-05
> UFO01945.5prime
CAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATCAGTACCGC
AAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGGATCAACAA
GTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGCTCAGACTG
GCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCGTGCAGCAT
CTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAATCCCGAACA
GAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTCCCGCGCCC
TGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACACTGATGACC
CATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAACAACCGCA
AGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTCTAGCTCCA
GCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCGTTTCCAGT
GGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGCCCCGGACA
GGTGTGGCGTCCCTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAACGGCATGATGAACCTGATCGCCAG
CGGCATCAGCACTTGTCGCTTGCGTATATATTTGCCCATGGTGAAACGGG
GCGAGAGTTGTCATATTTGCCACGTTTAAATCAAACTGTGAAACTCACCC
AGGATTGGCTGAAACGAAAAACATATCTCTCAATAACCCTTTAGGAAATA
GCAGTTCACGTAACCCGCCCAATCTTGGAATTTGTGTGAACTGTCGGAAA
TCGTCGGATACT
UFO01945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..683 | 9..566 | 2790 | 100 | Plus |
| E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 23..129 | 430 | 93.5 | Plus |
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 24..137 | 405 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26037163..26037720 | 9..566 | 2790 | 100 | Plus |
| 3R | 32079331 | 3R | 25999963..26000069 | 23..129 | 430 | 93.5 | Plus |
| 3R | 32079331 | 3R | 26005765..26005878 | 137..24 | 405 | 90.4 | Minus |
| 3R | 32079331 | 3R | 26022029..26022142 | 24..137 | 375 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:20 has no hits.
UFO01945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:04 Download gff for
UFO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm7-RA | 120..686 | 1..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:10 Download gff for
UFO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m7-HLH-RA | 120..686 | 1..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:05 Download gff for
UFO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m7-HLH-RA | 120..686 | 1..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:05 Download gff for
UFO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26037157..26037723 | 1..570 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:10 Download gff for
UFO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21862879..21863445 | 1..570 | 98 | == | Plus |
