UFO01946.5prime Sequence
1091 bp (984 high quality bases) assembled on 2008-11-05
> UFO01946.5prime
CAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCTCGGAAGAA
CAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCGGAGCTAGC
GGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGATAATCCTG
AGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGACGAATGGC
AACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTGCCGTTGGC
CAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATATGGCCAACA
ATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCATAGCCTCG
TTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAGAAAACCAT
ACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAGTTTGCTAT
TCCTTGATGGAGCCATGAACTTTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCATCCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGACGCTGTCCATAATGGCCACGTTTAAATC
AAACTGGTGAAACTCACCCAGGGATTGCTGAGACTGAAAAACATATTCTT
CAATAAACCCTTTAGGAACTAAGGCCAGGTTCACGTTAGACGCCACATCT
TGCGAATATATGGTGTAGAAACTGCGGAAATCGTCTGCAATCACTCCGAA
GCGATGAAACGTTTCAGTTGCTTCATGAAACGGTGTAACAG
UFO01946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes4-RB | 740 | CG11301-RB | 66..530 | 9..473 | 2325 | 100 | Plus |
| Mes4-RA | 683 | CG11301-RA | 66..530 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22412085..22412372 | 186..473 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 22411854..22412034 | 9..189 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:26 has no hits.
UFO01946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:15 Download gff for
UFO01946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes4-RA | 39..516 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:27 Download gff for
UFO01946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes4-RA | 57..534 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:28 Download gff for
UFO01946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes4-RA | 57..534 | 1..477 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:28 Download gff for
UFO01946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22411845..22412034 | 1..189 | 97 | -> | Plus |
| 2R | 22412089..22412372 | 190..473 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:27 Download gff for
UFO01946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18299594..18299877 | 190..473 | 100 | == | Plus |
| arm_2R | 18299350..18299539 | 1..189 | 97 | -> | Plus |
