UFO01947.5prime Sequence
1142 bp (876 high quality bases) assembled on 2008-11-05
> UFO01947.5prime
CAGTCGACATGACGGATCAACTGCTGAGCTCCACGGCCGGCGTACCGGGT
GATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGTGGACCCTA
TTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACAGCCCGTTC
TTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAGTTAGTCTC
AACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATATGCGCCAAC
TCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGAGAAGGAAG
CGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATACCTCAGCCG
GTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCAGTGGGCTT
GGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTATATGAGCT
ATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCGCCAAAGAG
CACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAGGACTATAG
ACGCACCGCCTGCGATCGGGAAAGAACCTAGATGCGGGACATGAACCGAG
CCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAAATGGGAAA
AAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTACATTAATCA
CCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGGTCGAAATGGCAATGGA
TGCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATGGGCAACG
ATCATTGGGGAGCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
TGCGTAAGTGGCCATAATCATAATCATAATCATAATCAAAATCACAACTA
GCCTAGGAGACTGTGGTCATGACTAGTGCTTGGATTCCCCACCAGCTGAA
AACCGCCCGGCGGCTGCGAAGCGGTTCTTGAACAAATCCCGGATGGGAGT
TCTGAAGGTCCATTACTGGGATCTCTATTCAACAGGAGAGTCCAAGCCGA
GCCTCCGATATACCAAATTAACGCCCCCGCGCCCCTGGCCCACTCTGTCG
CGCACGTAACGGGGGGTAAATCAATAAAGCCATTCCTGTCGC
UFO01947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1204 | 9..814 | 3935 | 99.4 | Plus |
| sage-RA | 1105 | CG12952-RA | 78..881 | 9..814 | 3935 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 677..9 | 3315 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9262878..9263015 | 814..675 | 585 | 97.9 | Minus |
Blast to na_te.dros performed 2014-11-28 23:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1652..1688 | 864..900 | 113 | 78.4 | Plus |
UFO01947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:14 Download gff for
UFO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..810 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:55 Download gff for
UFO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 73..887 | 1..822 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:15 Download gff for
UFO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 73..887 | 1..822 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:15 Download gff for
UFO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262872..9263013 | 677..822 | 95 | <- | Minus |
| 3R | 9263075..9263746 | 1..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:55 Download gff for
UFO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088594..5088735 | 677..822 | 95 | <- | Minus |
| arm_3R | 5088797..5089468 | 1..676 | 99 | | Minus |
