UFO01948.5prime Sequence
1091 bp (855 high quality bases) assembled on 2008-11-05
> UFO01948.5prime
CAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGTGCCGAGTT
TGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTCAAACCTGG
CAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAATTCTCCTTC
AGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCCAGACAGAT
CTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAGCAGAAGAA
ATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGAGGAAAAGA
AGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCAAGCGGCGA
AGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTCGTAACGAA
CGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGAATTTGATC
AGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCGATGTTAAT
CTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCGGATCACGA
TTTACCCAATGTTCAAATCCACAAGTGCTTATACTTGTGGAATTATCATG
AATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATGGAATAAG
ACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCGAGTGAGC
TGAAGGCACACAATCTCACCCATCACACCTTGGCGCCCCCGTTCGCCTGT
CGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGATGCACGA
GCGGGTCCACACCAACGAGCGACCATTTGTGTGCGATCAGTGCGGCTACG
GCCTTCATGAGGACCTGCATTCTTGAAGGCCCACATGGCCGGTCCACCAA
GTTGTAACGAAGTATAGTTGCGATGTTTTGCGATCGTTCGTGCTGCCCTG
AAGAAACATTCTGCGTACGCACTTCATCCTCCAATACCCAACAAGCGGAA
TGCTGAAGCCCGTCACCTCTCGTCGTCGGAAGTACATTGTTCAATGCCTC
AAGTTTTGAATCCGAATAGAAACCCTGGTTTGAGGTACCTC
UFO01948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8145-RB | 1553 | CG8145-RB | 51..1087 | 9..1062 | 4615 | 97 | Plus |
| CG8145-RC | 1862 | CG8145-RC | 51..1087 | 9..1062 | 4615 | 97 | Plus |
| CG8145-RA | 1217 | CG8145-RA | 51..1087 | 9..1062 | 4615 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8723433..8723951 | 147..666 | 2505 | 99.2 | Plus |
| 3R | 32079331 | 3R | 8724134..8724382 | 666..917 | 1020 | 96.4 | Plus |
| 3R | 32079331 | 3R | 8723224..8723361 | 9..146 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:27 has no hits.
UFO01948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:13 Download gff for
UFO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8145-RA | 1..1027 | 9..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:35 Download gff for
UFO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8145-RA | 44..1077 | 1..1051 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:28 Download gff for
UFO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8145-RA | 44..1077 | 1..1051 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:28 Download gff for
UFO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8723217..8723361 | 1..146 | 97 | -> | Plus |
| 3R | 8723433..8723950 | 147..665 | 99 | -> | Plus |
| 3R | 8724134..8724382 | 666..917 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:35 Download gff for
UFO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4549856..4550104 | 666..917 | 96 | -> | Plus |
| arm_3R | 4548939..4549083 | 1..146 | 97 | -> | Plus |
| arm_3R | 4549155..4549672 | 147..665 | 99 | -> | Plus |
