UFO01952.5prime Sequence
1096 bp (993 high quality bases) assembled on 2008-11-05
> UFO01952.5prime
CAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCGGCAGTGCG
GTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAGTTGTCCCA
GTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTATAGGACGC
TGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCCTGGAACTG
CTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAAAGCAGCGC
CGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCGAGGACCAC
AGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAGGGGCTTTG
ATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTTATTCAACG
GACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCACCCAGTGC
TCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACATTGAGTCG
GCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGTGGGCGAGT
GCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGATGGACTTGT
TTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATCGGAAAACT
GCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAGCTGCTTAA
GCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTACTTCCTAT
TCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCTTACGCAAG
CTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAGTACGTAGC
CAAGATTGGGGTGCTGTATTTCGACGAGCATCCCGGAGCTGCTCATTCTG
GCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATCGCCTATGG
CGGCTTTGAGGAGATGATGCGGACGATCATGACCGACCCTGGAGCGGCAA
ACGAGAATACGAACTGGAGCAGCTTCTAGAACATCGTTGGCGCGCGGGCC
AGTAATGCTAATCTATCTAATCTAGTCTAATCACTAGCTAGGAAAT
UFO01952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9853-RC | 1508 | CG9853-RC | 117..1132 | 9..1018 | 4855 | 99 | Plus |
| CG9853-RB | 1818 | CG9853-RB | 604..1619 | 9..1018 | 4855 | 99 | Plus |
| CG9853-RA | 1331 | CG9853-RA | 117..1132 | 9..1018 | 4855 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4398776..4399385 | 1001..396 | 2775 | 98.5 | Minus |
| 3R | 32079331 | 3R | 4399446..4399681 | 395..160 | 1180 | 100 | Minus |
| 3R | 32079331 | 3R | 4399739..4399893 | 163..9 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:09 has no hits.
UFO01952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:55 Download gff for
UFO01952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9853-RB | 604..1629 | 9..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:01 Download gff for
UFO01952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9853-RA | 117..1142 | 9..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:27 Download gff for
UFO01952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9853-RA | 117..1142 | 9..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:27 Download gff for
UFO01952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4398795..4399385 | 396..983 | 99 | <- | Minus |
| 3R | 4399446..4399680 | 161..395 | 100 | <- | Minus |
| 3R | 4399742..4399893 | 9..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:01 Download gff for
UFO01952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 224517..225107 | 396..983 | 99 | <- | Minus |
| arm_3R | 225168..225402 | 161..395 | 100 | <- | Minus |
| arm_3R | 225464..225615 | 9..160 | 100 | | Minus |
