UFO01953.5prime Sequence
1081 bp (966 high quality bases) assembled on 2008-11-05
> UFO01953.5prime
CAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCTCGGATGAT
GAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAAGACTCCAA
TATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGAGATGGAGG
AGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGACAGATAAT
CTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGATGATGGGTC
GAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGTCCCAAAAC
CAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGAAGTTGGCG
AGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTAAAGGACAA
TGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCTCCATCGAG
CTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTAAGCGATCC
TTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTGGAGAAAAT
GAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGTTGAGAAAG
TTTTAAAGGAGAAGATTCAAAAGAAAGAGCCTGAGGCGAAGATGAAGGAA
AAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGGAAAACAAA
ACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAAGGATAATCCGC
CAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAGGCCATGCTGGAAACA
TCCCAGACAGCGATTCCTGAAGCGGGAAAGAAGCCGGCCAAAACCAAAGT
CAAGCTACAGCGGATTCATCCGAGCGGGAAAGACTAAAAGTCGCGAAAGT
CCATTGACTCTGGCTCAGCCCAAGGCAGCCAAGGCCGAAAGTCAAGGCGG
TCAGAACTGGTGGCCTGGAAGGAGTGTCCACACGGATCTTTCATATGGAG
GCCCAGGCCACGTCGACTCCTCAGGGCTCCAAGGCGACGCAAGCGCAAAG
TCCAGCTTCTTCACATTCGTTGGGCGCCGGC
UFO01953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BigH1-RA | 1279 | CG3509-RA | 140..1200 | 7..1052 | 4795 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14663589..14664287 | 7..705 | 3450 | 99.6 | Plus |
| 3R | 32079331 | 3R | 14664381..14664709 | 705..1023 | 1035 | 93.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:14 has no hits.
UFO01953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:54 Download gff for
UFO01953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-RA | 141..1212 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:41 Download gff for
UFO01953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-RA | 141..1212 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:47 Download gff for
UFO01953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BigH1-RA | 134..1205 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:47 Download gff for
UFO01953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14663583..14664286 | 1..704 | 99 | -> | Plus |
| 3R | 14664381..14664748 | 705..1058 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:41 Download gff for
UFO01953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10489305..10490008 | 1..704 | 99 | -> | Plus |
| arm_3R | 10490103..10490470 | 705..1058 | 93 | | Plus |
