UFO01954.5prime Sequence
1116 bp (992 high quality bases) assembled on 2008-11-05
> UFO01954.5prime
CAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCTATTACCGA
CAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAGTTGCTCCA
CGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGCAGTCGATC
TGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGAAACTCTAC
GATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATCATAGCCGT
TGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCTCCAGGGAG
ATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACTTTGGTGGA
AATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGATGTCACCGG
GGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGTGGCTGCTC
TCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTGTGGCCAAG
ATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATGCAGATATT
TTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCCTTCGAGCA
TTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGGGCTACATT
CCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTGGCACAGAA
AACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGCCTGTGGAG
ACTTAAATGGGTTGAGTGATCCCGAAGAGGGCAAGACTTCCTCCTCAGAT
GAATCCAAATCAAATTTAGAGTATGTTTACGATGCTGTTATGGACGACGC
ATCTTATCCCCTGAATTTAAAGAGATTCTAAAGCAAGTCTATGATGAACA
ACGCCATATTATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAAGTCATAATCATAATCACACTA
GCCTAGGAGATCCTGGGTCATGAATAGTGCTTGGATTCCCACCAAATAAA
AACGCCCCGGCGGCCACCGAGCGTTCTGAACAATTCGAATGGGAGTCGGA
GTCATTACTGATCTAT
UFO01954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5220-RA | 1102 | CG5220-RA | 166..1071 | 9..913 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17041022..17041705 | 129..812 | 3420 | 100 | Plus |
| 3R | 32079331 | 3R | 17040847..17040969 | 9..131 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 17041763..17041864 | 813..913 | 460 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 19:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4219..4278 | 841..899 | 117 | 68.3 | Plus |
UFO01954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:52 Download gff for
UFO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5220-RA | 164..1078 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:23 Download gff for
UFO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5220-RA | 166..1080 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:18 Download gff for
UFO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5220-RA | 166..1080 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:18 Download gff for
UFO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17040847..17040967 | 9..129 | 100 | -> | Plus |
| 3R | 17041023..17041705 | 130..812 | 100 | -> | Plus |
| 3R | 17041763..17041864 | 813..913 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:23 Download gff for
UFO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12866569..12866689 | 9..129 | 100 | -> | Plus |
| arm_3R | 12866745..12867427 | 130..812 | 100 | -> | Plus |
| arm_3R | 12867485..12867586 | 813..913 | 99 | == | Plus |
