UFO01955.5prime Sequence
1074 bp (955 high quality bases) assembled on 2008-11-05
> UFO01955.5prime
CAGTCGACATGGGTCGCAAATTCCAGAATAAGAAAAAGAAGGCCGCGCCG
CAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACTGCCGCCACAGAG
ATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGGTGAACAAACAGC
GCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGGGACCGGCACTTA
ATGAAGGATATTAAGACCCTAATGCCGCACCACCGACCCGAATCCAAAAT
GGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGTGCGAAATGAAGC
ACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAAAGGGATCTGTAC
ATGTGGATATCCAACACCTCGGGATCGACTGGTCCATCCGCTAAATTCCT
CATCGAAAACATTCATACAATGGCCGAACTGAAGATGACGGGAAACTGCT
TGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAATTCGACGAGCTG
CCGCACCTTAAGCTGCTCAAGGAGCTGTTCGTGCAGACCTACTCCGTGCC
CAACCATCATCCCAAGAGCCAGCCCTTCGTCGATCACGTTTTCACCTTCA
CCTACCTGGACAAACGCATCTGGTTCAGAAATTTCCAGATTCTATCCGAA
GATGGCGGTTTGTCCGAAGTCGGGCCGCGTTACGTGATGAATCCTGTAAA
AATATTCGATGGTTCCTTCACTGGCAAAACCATTTGGGAGAATCCGGACT
ACGTGAGTCCATCCAAACAGCGGCAGGTACTTAAGAAGGCTGCCAAGGAT
AAGTACGTGAACCGAGTGGAGCAAAAGTCAAGCACGAGGCCACGCGACCT
ATTAGAGCCTACGATGGCATGGATACGATGAGCTATTCGAGGACGATGAT
CCCGTGAGACGGCCAGATACTGGCTGCGATAGCCAAAAAGAAGAAGAGAG
CCGCCAACATGACCAATCGGCGCTGACAGAGATCAGGAAACAACTGCAGC
CGTGGAAGATGTGATGAAGAAAGAGCAGATCATAACGCGTGAAAGTGCAG
CTTCTAGACATCGCTTGGGCGCGG
UFO01955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 89..1124 | 9..1024 | 4675 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281727..4282550 | 946..127 | 3920 | 99.5 | Minus |
| 3L | 28110227 | 3L | 4282609..4282729 | 129..9 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:43 has no hits.
UFO01955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:50 Download gff for
UFO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 70..1107 | 9..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:27 Download gff for
UFO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..1126 | 9..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:34 Download gff for
UFO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..1126 | 9..1028 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:34 Download gff for
UFO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4281631..4282548 | 129..1028 | 97 | <- | Minus |
| 3L | 4282610..4282729 | 9..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:27 Download gff for
UFO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281631..4282548 | 129..1028 | 97 | <- | Minus |
| arm_3L | 4282610..4282729 | 9..128 | 100 | | Minus |
