UFO01956.5prime Sequence
1117 bp (1004 high quality bases) assembled on 2008-11-05
> UFO01956.5prime
CAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTAGTCCTCCT
GCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGACCTGGAGCT
CAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGAATTTGTCA
AGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCGATGGCGAG
GTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCCAAGTACGC
CGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGCCCACATCG
ACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGGTAAAGGAC
ATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAACCCCCGATC
GCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTTTCTGCAGC
AAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACGTGTCCATC
CACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAACGGGAAAA
GTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTTGTTGCCCG
ACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGACCCGCATC
CTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGGCAGTA
CTGTTGTGTTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAACGGC
ATGATGAACCTGATCGGCAGCGGCCATCAGCACTTGTCGCTTGGCAATAT
TATTTGCCATGGGTGAACGGGGGCGAAAGCTGTCAATTGGCCAGTTATCC
AACTGGTGAACTCACCA
UFO01956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstE13-RB | 1061 | CG11784-RB | 230..907 | 9..686 | 3390 | 100 | Plus |
| GstE13-RA | 862 | CG11784-RA | 31..708 | 9..686 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9122620..9123155 | 151..686 | 2680 | 100 | Plus |
| 2R | 25286936 | 2R | 9122354..9122448 | 9..103 | 475 | 100 | Plus |
| 2R | 25286936 | 2R | 9122519..9122567 | 104..152 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:36 has no hits.
UFO01956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:49 Download gff for
UFO01956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11784-RA | 55..745 | 1..694 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:50 Download gff for
UFO01956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE13-RA | 24..714 | 1..694 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:07 Download gff for
UFO01956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE13-RA | 24..714 | 1..694 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:07 Download gff for
UFO01956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9122347..9122448 | 1..103 | 96 | -> | Plus |
| 2R | 9122519..9122567 | 104..152 | 100 | -> | Plus |
| 2R | 9122622..9123161 | 153..694 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:50 Download gff for
UFO01956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5009852..5009953 | 1..103 | 96 | -> | Plus |
| arm_2R | 5010024..5010072 | 104..152 | 100 | -> | Plus |
| arm_2R | 5010127..5010666 | 153..694 | 99 | == | Plus |
