UFO01957.5prime Sequence
1059 bp (958 high quality bases) assembled on 2008-11-05
> UFO01957.5prime
CAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCTGCGTCATC
GTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCATGCCCAGAG
TCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCTGGAGACGA
GGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCCACGAGCTA
ACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTGCTCTTCAA
GGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTCCATTGGCC
GTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCACGCTGATT
GTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCCATCGATTG
GCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAAGGGAGAGC
AGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACTTCGGCTCC
AAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAGGATCTGCA
GCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCGTGCGCCCG
CGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGTACCTGAAG
CTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAACAATCCGA
TGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGGTGTTGTGC
AGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCAGTTGGACG
CCGGACGAGGACTTCGGTATACTGCTTAAGCTTTGCAAGCTTACGAGGAG
ACTGCGCAAGCAGAGCCGTTGGTTTATCCTTCCCTGCTGTGTATCATCAC
CGGAAAGGGGCCACAAAGAGCACTATGTGGCCGGAAATCCAGAAGCTGCA
ATGGCAGAAGTGTCGGTGATCACGCCCTGCTAAAAGATCGAAGAAATACC
CACTGTTCTGCCAGCGCCGACCTGGGCGTGTGTTCGCCTGGAAACCATGA
GCCACTTGC
UFO01957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18012-RA | 1607 | CG18012-RA | 88..1116 | 9..1033 | 4845 | 98.5 | Plus |
| CG18012-RC | 1516 | CG18012-RC | 198..1025 | 210..1033 | 3825 | 98.1 | Plus |
| CG18012-RC | 1516 | CG18012-RC | 88..201 | 9..122 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17810479..17811039 | 569..9 | 2805 | 100 | Minus |
| 3R | 32079331 | 3R | 17809950..17810419 | 1033..568 | 1925 | 96.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4593..4630 | 298..261 | 109 | 76.3 | Minus |
UFO01957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:47 Download gff for
UFO01957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 89..1138 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:26 Download gff for
UFO01957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 83..1132 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:32 Download gff for
UFO01957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 83..1132 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:32 Download gff for
UFO01957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17809950..17810418 | 569..1033 | 96 | <- | Minus |
| 3R | 17810480..17811044 | 1..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:26 Download gff for
UFO01957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13635672..13636140 | 569..1033 | 96 | <- | Minus |
| arm_3R | 13636202..13636766 | 1..568 | 99 | | Minus |
