UFO01958.5prime Sequence
1137 bp (1016 high quality bases) assembled on 2008-11-05
> UFO01958.5prime
CAGTCGACATGGAATCGGATACGCTGGACCAGGAGAGTGCCGCGGCTGCT
CTAAAAAAACTATCGCCAAGTGAAAGTCCCGAAAGTTCGAAGAAATGGGA
GCCGACTTCGGGAGAGTGGGTTGCGGCGGGTGGGGGAGAAGAGGCGCCGC
CAACAAAGAGACAAAAGACTGCAGACGAAAAGGAGGAGAATCGGGAGGAA
GACGAGGATAGCGAGGAGAGCGTTGATGAGGAGGAGGATGATGGCGAGGG
CATCGTCCAGATTGGCGGCACCATCAGCCCAAGGCATTTCCAGCGCATCC
CCGTCTTTATCGTCGACTACCACAACGATGTGCTGGAGTTCATCTACCGC
TGCTTTGCCACCCGCCACCTTCCGCTGCAGAACAACACCCTTGTCCACTT
CGACTCGCATCCGGATCTGGTCATTCCACGGCACATTGCCGCCAGTTCCA
CCTACCAAAAGGAAACCATGTTAAATGAGCTTAGCATCGAGAACTGGATC
ATGCCCACACTTTATGCAGGACATTTCAACCGCGTCGTGTGGCTGAAGAA
CTCATGGTGCCAGCAGCTGCCCACTGGCAGGCACGACTTTAAGGTTGGAC
AAAAGGACGATCGCATTGGAGTGGACTGTCCGTTGGACTACTTTATTGCC
GACGGCAACTACTGCACTACGGAGGATCTGCAGGATGCCAAGAGCGTGGA
GCTGCAGGTTCACGATGCAGACAACGAAAGCCTCAATCCGAACGAATTCC
TAACGGAGAAGGACGCCAAGGGATTCGTGCTGGACATAGACCTCGACTTT
TTCAGCACCTCCAACCCCTTCTTGGAAATATACAAGGATGCCGATTGCTA
CAATCAGCTAAAGGAGATCTTCCACTTCGAAAGCGTGAGAAGGTGAAGAA
GTCGGGCACGGCTACTATAGCAGATTATTTGTGCCACGGCAGAGAGGCGA
CAGACTCAGTTGGATGCACTGAAGACGATTTCTGGCATCTGGAGAGAGCG
CAATTTCGAGGGACTGGAAAAGCGACGAAACGTGTTCACGCCCGAAGGGA
CGCTAGATTGTGAACTGCGATCAGCTGCAGAAAAAATCCGACCAATGATC
GACTGCATTGATCTTCGATCCGCAGACCCCGATAATA
UFO01958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESR6-RA | 1749 | CG6818-RA | 141..1290 | 9..1137 | 5070 | 97.2 | Plus |
| MESR6-RB | 1791 | CG6818-RB | 141..651 | 9..519 | 2555 | 100 | Plus |
| MESR6-RB | 1791 | CG6818-RB | 693..1332 | 519..1137 | 2520 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19092810..19093321 | 9..520 | 2560 | 100 | Plus |
| 3L | 28110227 | 3L | 19093661..19094169 | 518..1023 | 2320 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:09 has no hits.
UFO01958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:02 Download gff for
UFO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 131..1278 | 1..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:03 Download gff for
UFO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 133..1280 | 1..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:44 Download gff for
UFO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 133..1280 | 1..1128 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:44 Download gff for
UFO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19092802..19093320 | 1..519 | 99 | -> | Plus |
| 3L | 19093663..19094291 | 520..1128 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:03 Download gff for
UFO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19085902..19086420 | 1..519 | 99 | -> | Plus |
| arm_3L | 19086763..19087391 | 520..1128 | 95 | | Plus |
