UFO01959.5prime Sequence
1075 bp (865 high quality bases) assembled on 2008-11-05
> UFO01959.5prime
CAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGTACAAGGGG
GAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCTCTGTGCCT
CCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTCCAATCCGC
TGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCAACCAGAAG
TTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAGGGTTACCC
GATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCACCGCCTACG
CCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACTTCCTGTTT
GGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTACGCCAAGCG
CACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCAAAGGGAAG
CCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACGACAAGTTG
GACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAAGTGGTGAA
CCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGGCGACACCT
ACTGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCATCTTTAAG
ATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGCTGCCAAAA
CCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCGCATCGAGG
GATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGGAGGCCAGT
CTGACGCCCTCGGAGCGCAAGTTCCTGGACTCCGAGCTGAACACCAAAAT
AGTAGCTATGCGGGGGGGGCCGTCTTGGCCATGGTGCGTTTGCGGCATGG
CGTGGGATTTACACCAGCTAACGACACGCTTCTTCGACGGACTACGATGG
TGATGAGATTACGAGGATGACGAGATGGAGGAGGGCCTAAACGCAGCCTT
TCTAGACCATTCGTTTGGCGCGCGGGGGCCCAGGTAGTGGTCATATCATA
ATCATATCATAATCAATCCCAACTA
UFO01959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9393-RA | 1479 | CG9393-RA | 152..1129 | 9..989 | 4605 | 98.4 | Plus |
| CG9393-RB | 1589 | CG9393-RB | 152..1055 | 9..913 | 4335 | 98.8 | Plus |
| CG9393-RB | 1589 | CG9393-RB | 1168..1239 | 915..989 | 285 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9562180..9562570 | 913..522 | 1715 | 96.9 | Minus |
| 3R | 32079331 | 3R | 9562817..9563097 | 521..241 | 1405 | 100 | Minus |
| 3R | 32079331 | 3R | 9563189..9563337 | 243..95 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 9563436..9563522 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:30 has no hits.
UFO01959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:16:01 Download gff for
UFO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9393-RA | 145..1129 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:08 Download gff for
UFO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9393-RA | 148..1132 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:36 Download gff for
UFO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9393-RA | 148..1132 | 1..992 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:36 Download gff for
UFO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9561933..9562001 | 918..989 | 94 | <- | Minus |
| 3R | 9562175..9562570 | 522..917 | 96 | <- | Minus |
| 3R | 9562817..9563095 | 243..521 | 100 | <- | Minus |
| 3R | 9563190..9563336 | 96..242 | 100 | <- | Minus |
| 3R | 9563436..9563526 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:08 Download gff for
UFO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5387655..5387723 | 918..989 | 94 | <- | Minus |
| arm_3R | 5387897..5388292 | 522..917 | 96 | <- | Minus |
| arm_3R | 5388539..5388817 | 243..521 | 100 | <- | Minus |
| arm_3R | 5388912..5389058 | 96..242 | 100 | <- | Minus |
| arm_3R | 5389158..5389248 | 1..95 | 95 | | Minus |
