Clone UFO01960 Report

Search the DGRC for UFO01960

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:19
Well:60
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG7200-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01960.5prime Sequence

779 bp (683 high quality bases) assembled on 2008-11-05

> UFO01960.5prime
CAGTCGACATGGCGTCCGAAGAGCGGGATGGGGATGTCCTGCTCCAGTTG
CATCCCGAGGAAGTCGTGGAAACTGACCCACAGCTGCCCGAGGAAATCGA
GCGCTGTTCTGGACTAGATTATAACGATTTTTTCTGGCGCTACATGCACA
AGAACATACCGGTCATCATAGCCAATGTGTCTAACGACTGGGAGTGCCAG
AACTGGACTGTAGGCCAGTCCAGTCCAGAGTCGCGGGATCTCAACTCCAA
TCCGAGTGCATCTTCCATCAACTTTGACTACCTCAAAACCAAGATCAGCG
ATGGCCCGGTTCCAGTTGCCAATTGCAATTCGTCGTACTTCAATAGTCAC
ACCAAACTGGAGCTCAACTTCCACGACTACCTGGCCAAGTGGAGGAGTAG
CATCGAAAGTCAATCGTCAGCAGCGTGGACGTCGGCGGAAGTGAATAGTA
ATGTGGCTCCCGCGAGCGGGGACAATCTCTACCTCAAGGACTGGCATCTG
GCTGCCCAAATGCCGGGCTATAACTTCTACAAGGTGCCTAAATACTTTGC
CTCCGACTGGCTCAACGAACAACTGATTCAGCAGGGGAAAGACGACTATC
GAGTCGTCTATATGGGGCCCAAGAACTCATGGACCTCCTATCATGCGGAC
GTGTTTGGTCTCGTGCACAAATGGCTAATGTAAGGCGAAATAACCACTGA
CGTAAACAAAGGACAGATCGATCGCGACCCGGTGAGCACGTCACTAGTTA
TCGTTGGCTCTGATTTTCCTGTTGTTGTG

UFO01960.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7200-RB 2041 CG7200-RB 665..1314 9..658 3235 99.8 Plus
CG7200-RA 1517 CG7200-RA 141..790 9..658 3235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18157917..18158540 632..9 3105 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:21:11 has no hits.

UFO01960.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:59 Download gff for UFO01960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 129..794 1..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:26 Download gff for UFO01960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 133..798 1..667 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:21 Download gff for UFO01960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 133..798 1..667 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:21 Download gff for UFO01960.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18157829..18157863 632..667 91 <- Minus
2L 18157918..18158548 1..631 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:26 Download gff for UFO01960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18157829..18157863 632..667 91 <- Minus
arm_2L 18157918..18158548 1..631 99   Minus