UFO01960.5prime Sequence
779 bp (683 high quality bases) assembled on 2008-11-05
> UFO01960.5prime
CAGTCGACATGGCGTCCGAAGAGCGGGATGGGGATGTCCTGCTCCAGTTG
CATCCCGAGGAAGTCGTGGAAACTGACCCACAGCTGCCCGAGGAAATCGA
GCGCTGTTCTGGACTAGATTATAACGATTTTTTCTGGCGCTACATGCACA
AGAACATACCGGTCATCATAGCCAATGTGTCTAACGACTGGGAGTGCCAG
AACTGGACTGTAGGCCAGTCCAGTCCAGAGTCGCGGGATCTCAACTCCAA
TCCGAGTGCATCTTCCATCAACTTTGACTACCTCAAAACCAAGATCAGCG
ATGGCCCGGTTCCAGTTGCCAATTGCAATTCGTCGTACTTCAATAGTCAC
ACCAAACTGGAGCTCAACTTCCACGACTACCTGGCCAAGTGGAGGAGTAG
CATCGAAAGTCAATCGTCAGCAGCGTGGACGTCGGCGGAAGTGAATAGTA
ATGTGGCTCCCGCGAGCGGGGACAATCTCTACCTCAAGGACTGGCATCTG
GCTGCCCAAATGCCGGGCTATAACTTCTACAAGGTGCCTAAATACTTTGC
CTCCGACTGGCTCAACGAACAACTGATTCAGCAGGGGAAAGACGACTATC
GAGTCGTCTATATGGGGCCCAAGAACTCATGGACCTCCTATCATGCGGAC
GTGTTTGGTCTCGTGCACAAATGGCTAATGTAAGGCGAAATAACCACTGA
CGTAAACAAAGGACAGATCGATCGCGACCCGGTGAGCACGTCACTAGTTA
TCGTTGGCTCTGATTTTCCTGTTGTTGTG
UFO01960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7200-RB | 2041 | CG7200-RB | 665..1314 | 9..658 | 3235 | 99.8 | Plus |
CG7200-RA | 1517 | CG7200-RA | 141..790 | 9..658 | 3235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18157917..18158540 | 632..9 | 3105 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:11 has no hits.
UFO01960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:59 Download gff for
UFO01960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7200-RA | 129..794 | 1..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:26 Download gff for
UFO01960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7200-RA | 133..798 | 1..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:21 Download gff for
UFO01960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7200-RA | 133..798 | 1..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:21 Download gff for
UFO01960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18157829..18157863 | 632..667 | 91 | <- | Minus |
2L | 18157918..18158548 | 1..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:26 Download gff for
UFO01960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18157829..18157863 | 632..667 | 91 | <- | Minus |
arm_2L | 18157918..18158548 | 1..631 | 99 | | Minus |