UFO01961.5prime Sequence
940 bp (784 high quality bases) assembled on 2008-11-05
> UFO01961.5prime
CAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTGGCTGCGGC
TTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAACTGGCGCA
GGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATGGCTAAACG
AGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCTGCAGCGCG
AACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCACACCCCAC
CACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGAGACGCGTG
CCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGCTCAGTTTG
AACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATACGTGGAACT
CAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAAAGAGGACT
GCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAG
AAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTCCGTTTGCC
CGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCGCATTATAA
TCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGCTGTGGAAC
GATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGCGCTGCCGT
TTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTACACATCTG
CGATGATCAGCATCGACGCAGCACCATAGTATCTTTAGTGATATTTCGAC
ATCATTTGATTTCTCGCTTGTATGTCGATTTGCAACTTTATCCCACGACA
CCGTCAGTGAATCACGACAGCACATGCACCCTGGACGAAATTTGCAAGCG
CAGTGCATCGACACACCCTCCGCTGAACCGGTACATGATG
UFO01961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5854-RA | 1562 | CG5854-RA | 115..1058 | 8..926 | 3990 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23934563..23934932 | 216..585 | 1850 | 100 | Plus |
| 3R | 32079331 | 3R | 23934170..23934344 | 42..216 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 23935029..23935216 | 586..771 | 840 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:56 has no hits.
UFO01961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:44 Download gff for
UFO01961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 106..1012 | 1..884 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:20 Download gff for
UFO01961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 109..1015 | 1..884 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:15 Download gff for
UFO01961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 109..1015 | 1..884 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:15 Download gff for
UFO01961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23934171..23934344 | 43..216 | 100 | -> | Plus |
| 3R | 23934564..23934932 | 217..585 | 100 | -> | Plus |
| 3R | 23935029..23935281 | 586..823 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:20 Download gff for
UFO01961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19759893..19760066 | 43..216 | 100 | -> | Plus |
| arm_3R | 19760286..19760654 | 217..585 | 100 | -> | Plus |
| arm_3R | 19760751..19761003 | 586..823 | 94 | -> | Plus |
