UFO01962.5prime Sequence
1101 bp (985 high quality bases) assembled on 2008-11-05
> UFO01962.5prime
CAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGGTTGCCTCG
TTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAATGTGAAGTG
GGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGAGCCAATTC
TAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCAGCTTGAAT
GCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATCATGAAAAA
CTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACGTCTCACCT
GGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCAGCGATGCC
TCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTGCAGGAGAA
GAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGTCCAGCTCA
ACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGACTTTCAAA
GATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTTTGCCTGGG
TGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCAATCTGTGC
CCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCACACCCTTC
CGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAGGGTCACGC
TGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCGCACGAGCG
ATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATGGTGAGGCG
CGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTCATTGATCG
TGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGACGGAAAGT
ATATCACGTCGGTGCAGGCGACGGTCTGATCGTATCGACGCCCACAGAAG
CACGGCATATGCGGCGGCCGCCGGTGCGTCATGATCATCCCTCCGGTGCC
GGGCGATTATGGGTGACTCCAATCTGCGCGAATTCGCTTAGCTTCGAACC
AATTGGGGGTGCCAGCAGAATGGGAACTGAAGAATATCCGATTCCTCGAG
A
UFO01962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RB | 1824 | CG33156-RB | 100..1174 | 9..1083 | 4985 | 98 | Plus |
| CG33156-RF | 1795 | CG33156-RF | 242..1145 | 180..1083 | 4130 | 97.6 | Plus |
| CG33156-RA | 1874 | CG33156-RA | 322..1224 | 181..1083 | 4125 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549536 | 1082..500 | 2330 | 95.6 | Minus |
| 2R | 25286936 | 2R | 13549599..13549918 | 499..180 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 13549986..13550159 | 182..9 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 13539104..13539359 | 430..172 | 600 | 83 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 730..500 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13538301..13538468 | 977..812 | 320 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:27 has no hits.
UFO01962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:42 Download gff for
UFO01962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 117..1176 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:35 Download gff for
UFO01962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 100..1159 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:33 Download gff for
UFO01962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 100..1159 | 9..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:33 Download gff for
UFO01962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548968..13549536 | 500..1068 | 96 | <- | Minus |
| 2R | 13549599..13549916 | 182..499 | 100 | <- | Minus |
| 2R | 13549987..13550159 | 9..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:35 Download gff for
UFO01962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436473..9437041 | 500..1068 | 96 | <- | Minus |
| arm_2R | 9437104..9437421 | 182..499 | 100 | <- | Minus |
| arm_2R | 9437492..9437664 | 9..181 | 100 | | Minus |
