UFO01963.5prime Sequence
1090 bp (971 high quality bases) assembled on 2008-11-05
> UFO01963.5prime
CAGTCGACATGGAGCCAATGAATCTGGGCAGCCCGGTCAACAGTCCTGGC
TCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCGATCCGCAAGG
TATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGGCGCTCTAATA
TAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGAGCTCAACCGC
TCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAGGCGCCCACAC
GGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAGACGCACAGCC
ACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTCGCTGCGCGAA
CAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGCTGCAGTTGCA
GTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAATGACTCGTTCG
CACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGCACTGTGCTCG
CCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCACATCCGTGAC
GACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACCATCTTCGGGT
TCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCACCGTCTGCGGC
ACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACTGGATGTATGT
GCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGAACTACAACGAAA
AAATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTGCACGGATAGG
TCGGTGATCGATAAAGGAGAACATCGGCTCTGTGCCCAATGCAGAGATAG
GAGATCCCCCCACCAGCCCCAGTGCGATTCGACCGTTTTCCCAGCAGTCG
TACAAGCTGGCCCGCAAAGATAACATCATATCGCCGCAGCGATGTGCAGC
AAAAGAGCTCCGGTCTGATGGACAAGCCATGGACTTGATATTCGGCTGGC
AGCCTTTCTAGACCATCGTTGGCGCGCCGGGCCCAGGTAGGTGTCATAAT
CTATCATAATCATAATCATATTCAACTAGCTAGAGAATTC
UFO01963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-RA | 1249 | CG6540-RA | 120..1117 | 4..999 | 4845 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18648515..18649357 | 159..999 | 4010 | 99.2 | Plus |
| X | 23542271 | X | 18648301..18648456 | 4..159 | 765 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:08 has no hits.
UFO01963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:41 Download gff for
UFO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 112..1112 | 1..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:39 Download gff for
UFO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 117..1117 | 1..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:42 Download gff for
UFO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 117..1117 | 1..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:42 Download gff for
UFO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18648298..18648456 | 1..159 | 98 | -> | Plus |
| X | 18648516..18649357 | 160..999 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:39 Download gff for
UFO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18542331..18542489 | 1..159 | 98 | -> | Plus |
| arm_X | 18542549..18543390 | 160..999 | 99 | == | Plus |
