UFO01965.5prime Sequence
1095 bp (983 high quality bases) assembled on 2008-11-05
> UFO01965.5prime
CAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCCGCGTGGGA
TCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGCACCGCCCA
GCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCAGATCAAGA
AGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGAAGCCGTAC
ATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATGGTGCTGGA
CGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCACCTTTAGGC
GCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACATCGGCGGC
ACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACCTCCAAGTC
GCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGACCTGGTCC
CGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGCCCTGGCTG
CAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAGTACCTGCA
GTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTGCATCCTGT
GCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACGCCGAGAAG
TACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATCATCGACTC
GCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGACCCCTTCA
GCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCTGCCCCAAG
GGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTGCTCTCGGG
CCTGGCCTCCAAGCCGGCTCCGAAGCTGGAGACGGCGGCGCTGCACAAGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATA
ATCATATCATATCATAATCATATCACACTAGCCTAGGAGATCCTGGTCAT
GACTGTGCTGGGATCTCACCAATAAAACGCCCGCCGCCACCGGACGTTCT
GGAACAATTCGAATGGGGTCTTGAGGTCATACTGATCTATCAACG
UFO01965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhB-RA | 1219 | CG3283-RA | 130..1020 | 9..899 | 4455 | 100 | Plus |
| CG7349-RC | 1949 | CG7349-RC | 815..1430 | 193..811 | 1055 | 79.2 | Plus |
| CG7349-RA | 1888 | CG7349-RA | 754..1369 | 193..811 | 1055 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6808087..6808527 | 69..509 | 2205 | 100 | Plus |
| 2R | 25286936 | 2R | 6808579..6808973 | 505..899 | 1960 | 99.7 | Plus |
| X | 23542271 | X | 18895391..18895889 | 193..694 | 845 | 78.8 | Plus |
| 2R | 25286936 | 2R | 6807755..6807817 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:27 has no hits.
UFO01965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:39 Download gff for
UFO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhB-RA | 137..1035 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:21 Download gff for
UFO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhB-RA | 122..1020 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:54 Download gff for
UFO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhB-RA | 122..1020 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:54 Download gff for
UFO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6807747..6807817 | 1..71 | 94 | -> | Plus |
| 2R | 6808090..6808526 | 72..508 | 100 | -> | Plus |
| 2R | 6808583..6808973 | 509..899 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:21 Download gff for
UFO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2695252..2695322 | 1..71 | 94 | -> | Plus |
| arm_2R | 2695595..2696031 | 72..508 | 100 | -> | Plus |
| arm_2R | 2696088..2696478 | 509..899 | 100 | == | Plus |
