UFO01967.5prime Sequence
1126 bp (1016 high quality bases) assembled on 2008-11-05
> UFO01967.5prime
CAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCCCAGGCAGT
GGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCCCTGCCCTC
TAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGGCTTGGACT
CACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCACCGTTGAG
GAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTCGAGGGCGC
CAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGTGTCGCACA
CCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCGGAGCCACC
TATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCCGTGCTCCT
GGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTATCCATCAGT
TCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGGAGTCCAAG
GTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGATTACACCCT
CTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGGCGTGGTCG
TTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGGGCTCCGAA
CTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATAGCTATTAT
GTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTCGGGGACTC
TGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAAGGCCAGCGACCAG
CTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAGGAGTCGGT
GGCCACGTTAGCGTATCAGATCGATCTGCCCAAAGCGAATCTGGTCTTCA
GAGGCGGAATTGATTCCAACTGGCAAATCTTGGTGTTTGGAGAAGCGTCT
GGCTTCATAGGCCATTCACACTAGCCCTGAGCGGACGCATGAACCACGTG
AAGAACAACTTTAGAACCTCGGCTGCGGGCTGATGATCGGGGCAAGCTTT
CGGAACATTCGTTGGGCGCGCGGGCCCAGGTAGTGGTCATATCTTAGTCA
TATCATAATCATATCACACTAGCCTA
UFO01967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom40-RC | 2395 | CG12157-RC | 418..1453 | 4..1040 | 5035 | 99.2 | Plus |
| Tom40-RB | 1861 | CG12157-RB | 290..1325 | 4..1040 | 5035 | 99.2 | Plus |
| Tom40-RA | 1676 | CG12157-RA | 105..1140 | 4..1040 | 5035 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7738379..7738800 | 483..904 | 2110 | 100 | Plus |
| X | 23542271 | X | 7737871..7738135 | 221..485 | 1325 | 100 | Plus |
| X | 23542271 | X | 7737465..7737687 | 4..226 | 1085 | 99.1 | Plus |
| 2R | 25286936 | 2R | 6225929..6226628 | 225..924 | 560 | 72 | Plus |
| X | 23542271 | X | 7738899..7739036 | 902..1040 | 460 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:49 has no hits.
UFO01967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:38 Download gff for
UFO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RB | 291..1335 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:16 Download gff for
UFO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 110..1154 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:11 Download gff for
UFO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 102..1146 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:11 Download gff for
UFO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7737462..7737683 | 1..222 | 99 | -> | Plus |
| X | 7737873..7738135 | 223..485 | 100 | -> | Plus |
| X | 7738382..7738799 | 486..903 | 100 | -> | Plus |
| X | 7738901..7739036 | 904..1040 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:16 Download gff for
UFO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7631495..7631716 | 1..222 | 99 | -> | Plus |
| arm_X | 7631906..7632168 | 223..485 | 100 | -> | Plus |
| arm_X | 7632415..7632832 | 486..903 | 100 | -> | Plus |
| arm_X | 7632934..7633069 | 904..1040 | 94 | == | Plus |
