UFO01969.5prime Sequence
1076 bp (913 high quality bases) assembled on 2008-11-05
> UFO01969.5prime
CAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTGAGAAGGAA
AAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAGGCGACCAG
CGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATCGGCGTCCT
CCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTTCGCGGAGC
AGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGACTCCTCGAG
CTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAAGAACCGAA
GACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATAAGCCCAGC
GCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGTGTCTCCAA
ATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCGAGATCGCG
ATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGATCCAACGAT
AGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCTCGCTCAGC
CAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGTTGAGAGGA
CGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTCGCTCGCCT
TCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGCAACGTTAC
CAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGTGAAGAATG
TGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCGGCGTGCGT
TTGTGGATATGCACACCGAGATGTGAGTCCGCATGAGCATATGGATGCGG
CAGATAGATGGCAGAGATACGTATCCCGTTGTCTTAGTAAACAGAGGCCG
CCCTGCTCGTCTTCGCCACGATGCGCGTCGCAACGAACGCTGGCGATCCA
CCAGTCATAGTCACGATCTGAGAGTGTGCGCGCGCGACGCTCATCCCTGA
GACGCGTCCACGGTCTCGTCCATCTGCGACCACATAATGAGTCGGACTCA
ACTCTGCGCGTAGTCGTACAATATAT
UFO01969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-RA | 1370 | CG16788-RA | 150..1115 | 9..949 | 4180 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9552688..9553326 | 170..807 | 3145 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9552257..9552422 | 7..172 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:06 has no hits.
UFO01969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:37 Download gff for
UFO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 131..1116 | 1..961 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:00 Download gff for
UFO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 140..1125 | 1..961 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:42 Download gff for
UFO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 140..1125 | 1..961 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:42 Download gff for
UFO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9552257..9552422 | 7..172 | 99 | -> | Plus |
| 3R | 9552691..9553502 | 173..961 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:00 Download gff for
UFO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5377979..5378144 | 7..172 | 99 | -> | Plus |
| arm_3R | 5378413..5379224 | 173..961 | 95 | | Plus |
