UFO01971.5prime Sequence
1124 bp (964 high quality bases) assembled on 2008-11-05
> UFO01971.5prime
CAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACCAGAAGGTG
CACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGATTCCTGGA
GAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAAAAAGCAAA
AGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATCCCGATGAG
TTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAGCACCACGA
GAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCTCATGCAGA
CGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGCGCAAGAAG
ATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATTAAGGGAGC
AGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGAGTTGGACA
TGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGGAGGAAAAG
AAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAGCAGCGCAT
CAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGGCATCGTCC
AGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCCTACTGAAG
CCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTCTACAAATT
CCGCTACGAACGCAAGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
GACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCTGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAAACA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGG
CATTCTGCCGACATGGAAGCAATCACAAAACGGCAATGATGAACCTGAAT
CGCCAGCGGCCATCAGCACCTTGTCCGCTTGTGTTATAAATATTTGCCAT
GGGTGAACGGGGCAAGAAGTTGTC
UFO01971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1789-RA | 860 | CG1789-RA | 87..797 | 9..719 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8720606..8721109 | 9..512 | 2520 | 100 | Plus |
| X | 23542271 | X | 8721233..8721440 | 512..719 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:14 has no hits.
UFO01971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:45 Download gff for
UFO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1789-RA | 50..760 | 9..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:24 Download gff for
UFO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1789-RA | 87..797 | 9..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:19 Download gff for
UFO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1789-RA | 87..797 | 9..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:19 Download gff for
UFO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8721234..8721440 | 513..719 | 100 | == | Plus |
| X | 8720606..8721109 | 9..512 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:24 Download gff for
UFO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8614639..8615142 | 9..512 | 100 | -> | Plus |
| arm_X | 8615267..8615473 | 513..719 | 100 | == | Plus |
