UFO01980.5prime Sequence
1080 bp (982 high quality bases) assembled on 2008-11-05
> UFO01980.5prime
CAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCACCCAGGAGA
CTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCACGAGGGACC
GGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGTGGATTTGG
ATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGGACCGGCTG
CTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTGATTCCCAG
TGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGAGACGATAT
CGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACCAGTTCTCT
GGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCGGTGGAATC
TGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAACAACGAGT
TGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCAAGGAGTTC
AAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAATGTTGAAGT
GGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGACGCCAGCG
AAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGATTGGGCTCC
GGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTACTTGGCTA
TGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGCCTCGAACT
CAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCATAGTTGAA
AGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTGCAGGAGCC
GTTGAGAGAGTAGCAAATCGAATGCCATTCAATCGCTACTGGAGACAGCG
TCAAGCCAATGTGCAGAAGTTTGAGCCCAAACTGCTGGCCGACTACGCGA
GTCGTATCAGATAGGCCAGAGTTTGAGCAGCGGTGCAGCGACACTGATTC
GCAAGCGTGAGGACGTAGCCACCATCAGAGACCTCACGAACGGAGCAGCG
CGACTGGGTCTCAGACGGACGATCGACTCG
UFO01980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-RB | 1626 | CG4882-RB | 313..1347 | 9..1026 | 4745 | 98.3 | Plus |
| CG4882-RA | 1397 | CG4882-RA | 84..1118 | 9..1026 | 4745 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23881174..23881588 | 960..551 | 1825 | 98.8 | Minus |
| 2R | 25286936 | 2R | 23881720..23882063 | 552..209 | 1720 | 100 | Minus |
| 2R | 25286936 | 2R | 23882114..23882317 | 212..9 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:40 has no hits.
UFO01980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:27 Download gff for
UFO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 106..1138 | 1..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:07 Download gff for
UFO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 75..1107 | 1..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:26 Download gff for
UFO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 75..1107 | 1..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:26 Download gff for
UFO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23881120..23881587 | 552..1006 | 97 | <- | Minus |
| 2R | 23881721..23882060 | 212..551 | 100 | <- | Minus |
| 2R | 23882115..23882326 | 1..211 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:07 Download gff for
UFO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19768643..19769110 | 552..1006 | 97 | <- | Minus |
| arm_2R | 19769244..19769583 | 212..551 | 100 | <- | Minus |
| arm_2R | 19769638..19769849 | 1..211 | 98 | | Minus |
