UFO01981.5prime Sequence
1119 bp (1012 high quality bases) assembled on 2008-11-05
> UFO01981.5prime
CAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATCAGTTGGCG
AGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTCACCAAGCT
GGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGATCGCGAGG
CTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACTCGGCGTAC
GGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAATGTCGAGAT
ACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGACCACGGACA
TGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCGAGCTGGTG
ACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAGCAGGATTT
CCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCTGGACACGC
TCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGGAGTGCTAC
TACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAGCAGTTCAA
TTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATCCGGAGTCT
CCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTTCGGGCACG
AGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTCACCGGCTG
CACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGACAATAGGA
AAGGTGGACAAGTTAGTTAAAGACATTTATGGTGGCGATTACAACCGCTT
TGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATGCATCTCA
ACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAACGCCACTCTG
GTCACCATACGAATAATATCGGCTCCATAGCCAGGATGTGCGGCGCTGAT
GAGAGATCGATAGGGTCGTCTTTGGTGGGCAACTTTCTGCGAGTTACCCC
ATTTCCATGAAGCTGCTGGCGTACAAATGGAGTTCTGGTCAATGGCACAT
GTAGGGACTTTCTTGGAACACGAGGATACTGCTGTGCGTGCATCCGACTG
ACGCTTAACGATGACTTTA
UFO01981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RB | 1910 | CG5725-RB | 384..1462 | 8..1080 | 5005 | 98.2 | Plus |
| fbl-RC | 2093 | CG5725-RC | 153..1186 | 53..1080 | 4780 | 98.2 | Plus |
| fbl-RA | 1866 | CG5725-RA | 382..1418 | 50..1080 | 4780 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20389913..20390208 | 231..526 | 1480 | 100 | Plus |
| 3L | 28110227 | 3L | 20388668..20388847 | 54..233 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 20390456..20390634 | 651..830 | 835 | 98.9 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 527..652 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20390688..20390802 | 829..942 | 510 | 98.3 | Plus |
| 3L | 28110227 | 3L | 20384812..20384858 | 8..54 | 235 | 100 | Plus |
| 3L | 28110227 | 3L | 20390885..20390962 | 964..1040 | 230 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:55:18 has no hits.
UFO01981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:25 Download gff for
UFO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 374..1439 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:07 Download gff for
UFO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 376..1441 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:24 Download gff for
UFO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 376..1441 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:24 Download gff for
UFO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20390458..20390634 | 653..830 | 98 | -> | Plus |
| 3L | 20390690..20390825 | 831..964 | 96 | -> | Plus |
| 3L | 20384804..20384858 | 1..54 | 92 | -> | Plus |
| 3L | 20388669..20388847 | 55..233 | 100 | -> | Plus |
| 3L | 20389916..20390208 | 234..526 | 100 | -> | Plus |
| 3L | 20390268..20390393 | 527..652 | 100 | -> | Plus |
| 3L | 20390886..20390985 | 965..1061 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:07 Download gff for
UFO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20377904..20377958 | 1..54 | 92 | -> | Plus |
| arm_3L | 20381769..20381947 | 55..233 | 100 | -> | Plus |
| arm_3L | 20383016..20383308 | 234..526 | 100 | -> | Plus |
| arm_3L | 20383368..20383493 | 527..652 | 100 | -> | Plus |
| arm_3L | 20383558..20383734 | 653..830 | 98 | -> | Plus |
| arm_3L | 20383790..20383925 | 831..964 | 96 | -> | Plus |
| arm_3L | 20383986..20384085 | 965..1061 | 92 | | Plus |
