UFO01982.5prime Sequence
1136 bp (923 high quality bases) assembled on 2008-11-05
> UFO01982.5prime
CAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCTACATGCTG
TGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCCGGCATCAA
GGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGCAATGAAGG
ACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACGACTACGAT
CGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCTGCCAACGG
TGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGCGAAGAAGA
GCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCGAGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAGAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCCCCGTAACACGCCACATCTTTCCGAATATATGTGTAGAAACTGCC
GTGAAATCGTCGTGTTTTCCCTCCAGAGCGATGAACAACGTTTCAGTTTG
CTTCATGGAAAACGGTGTAACAAGGTGAACCACTATCCCATATTCACCCA
GCTCCACCGTCTTTCCATTGCCTTGAAATTCCCGGATTGAACATTCCATC
CAGGCCGTGCCAGAATGTGTGAATAAAGGCCGGATTAAACCTTGGTGCCT
TAATTTTTTTCTTTACCGTCTCTTTAAAAGGCCGTA
UFO01982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HmgD-RD | 1495 | CG17950-RD | 670..1005 | 9..344 | 1680 | 100 | Plus |
| HmgD-RC | 967 | CG17950-RC | 142..477 | 9..344 | 1680 | 100 | Plus |
| HmgD-RB | 1279 | CG17950-RB | 94..429 | 9..344 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21715692..21715877 | 159..344 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 21715468..21715618 | 9..159 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 21698391..21698510 | 155..36 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:06 has no hits.
UFO01982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:35 Download gff for
UFO01982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HmgD-RB | 318..662 | 1..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:18 Download gff for
UFO01982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HmgD-RA | 86..430 | 1..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:13 Download gff for
UFO01982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HmgD-RB | 85..429 | 1..344 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:13 Download gff for
UFO01982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21715459..21715617 | 1..158 | 97 | -> | Plus |
| 2R | 21715692..21715877 | 159..344 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:18 Download gff for
UFO01982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17602964..17603122 | 1..158 | 97 | -> | Plus |
| arm_2R | 17603197..17603382 | 159..344 | 100 | == | Plus |
