UFO01983.5prime Sequence
1053 bp (847 high quality bases) assembled on 2008-11-05
> UFO01983.5prime
CAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCATGTGGCAG
AACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGACAGACGCC
GGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTATGGAACCA
AGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTGGCATTCGC
TATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCTTACGGATC
CATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAACAAGAACA
TCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCATCAAGCGC
AACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGACAACATCGA
GATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCTCTACAACC
GTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCGGCGGCGTG
GACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGTGGACGATC
CTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTTGGCCGTTC
CGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCGCCGTAGAA
GCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTACCGCGATAC
TCGTAATATTTCCCAATACACTGTGTGCGTGTGCAGCGTCAACGGATGCG
GCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCGCCGAAACC
ATAAAGGGATACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
TGATAAGTGGTCATAATCATAATCATAAGCATTAATCATAATCACAACTA
GCCTAGGAGATCGCGGTCATGACTAGTGCTTGGAATTCTCACCAACAAGA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGG
GTCATTACTGGATCTAATCAACAGGAGTCAGAGGCGGGGCTCGATATTCA
ATT
UFO01983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta7-RB | 1026 | CG12000-RB | 100..904 | 8..812 | 4010 | 99.9 | Plus |
| Prosbeta7-RA | 1215 | CG12000-RA | 289..1093 | 8..812 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5357355..5357860 | 662..157 | 2515 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5357924..5358076 | 160..8 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 5357134..5357284 | 812..662 | 740 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 343..412 | 109 | 63.5 | Plus |
UFO01983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:34 Download gff for
UFO01983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta4-RB | 92..908 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:57 Download gff for
UFO01983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta7-RA | 283..1099 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:56 Download gff for
UFO01983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta7-RA | 283..1099 | 1..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:56 Download gff for
UFO01983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5357128..5357283 | 663..818 | 97 | <- | Minus |
| 3R | 5357355..5357856 | 161..662 | 100 | <- | Minus |
| 3R | 5357924..5358081 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:57 Download gff for
UFO01983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1182850..1183005 | 663..818 | 97 | <- | Minus |
| arm_3R | 1183077..1183578 | 161..662 | 100 | <- | Minus |
| arm_3R | 1183646..1183803 | 1..160 | 97 | | Minus |
