UFO01988.5prime Sequence
969 bp (603 high quality bases) assembled on 2008-11-05
> UFO01988.5prime
CAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCCTATTCGGC
AAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCTGGTAAAAC
CACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTA
CCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTAGCTTTACA
GTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGGAGGCACTA
CTTCCAGAATACACAAGGTCTTATCTTCGTCGTGTACAGCAATGACCGAC
AGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGGCAGAGGAC
GAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAGGATCTGCC
AAATGCATTGAACGCGGCCGAAATCACCGACAAGCTCGGCTTGCACTCAC
TCATAAACCGCAACTGGTACATCCAAGCGACGTGTGCAACTAACGGTGAT
GGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAGAACGCTAA
TCGCGCAAGCTTTCTAGACCATTCATTTGGCGCGCGCGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATATTCATAATCACGCTAGCCTAGGAGAT
CCTGGTCATGACTAGCGCTTGGATTCTCACCAATATAGACGCCCGGCGGC
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTATGGATC
TATCAACAGGGGGTCAGGCGAGTGCGATATCAATTTACGCCCCGCCATGC
CCTCGTCGCAGAACTGTTGTGAATTCATTAAGCACTCTTGCGGACTTGGA
ACCCTCCGCAAACGGGCTGGATGAACCTGAATCGCCAGGCGGGCATCAGC
ACCTTGGTCCTCTTGGCGAGTATATTTGGCGCATGGGGGAAACCGGGGCC
AAAAAATTTGACCAATATC
UFO01988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf79F-RJ | 1464 | CG8385-RJ | 341..887 | 8..554 | 2645 | 98.9 | Plus |
| Arf79F-RI | 1459 | CG8385-RI | 336..882 | 8..554 | 2645 | 98.9 | Plus |
| Arf79F-RH | 1456 | CG8385-RH | 205..751 | 8..554 | 2645 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22869085..22869248 | 554..391 | 760 | 97.6 | Minus |
| 3L | 28110227 | 3L | 22869840..22869990 | 158..8 | 755 | 100 | Minus |
| 3L | 28110227 | 3L | 22869345..22869475 | 393..263 | 610 | 97.7 | Minus |
| 3L | 28110227 | 3L | 22869664..22869775 | 267..156 | 560 | 100 | Minus |
| 4 | 1348131 | 4 | 1124441..1124644 | 81..284 | 480 | 82.4 | Plus |
| 2R | 25286936 | 2R | 15323847..15324026 | 105..284 | 225 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:59 has no hits.
UFO01988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:50 Download gff for
UFO01988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 203..761 | 1..562 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:16 Download gff for
UFO01988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 198..756 | 1..562 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:49 Download gff for
UFO01988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 198..756 | 1..562 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:49 Download gff for
UFO01988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22869080..22869246 | 393..562 | 95 | <- | Minus |
| 3L | 22869346..22869471 | 267..392 | 98 | <- | Minus |
| 3L | 22869665..22869774 | 157..266 | 100 | <- | Minus |
| 3L | 22869842..22869994 | 1..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:16 Download gff for
UFO01988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22862765..22862874 | 157..266 | 100 | <- | Minus |
| arm_3L | 22862942..22863094 | 1..156 | 98 | | Minus |
| arm_3L | 22862180..22862346 | 393..562 | 95 | <- | Minus |
| arm_3L | 22862446..22862571 | 267..392 | 98 | <- | Minus |
