UFO01989.5prime Sequence
1073 bp (907 high quality bases) assembled on 2008-11-05
> UFO01989.5prime
CAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTCTCCGCCTC
CACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCTGAGCAATC
TCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAAGCAGGGCG
TGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTCAGGTGCTT
CAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAATCTGCAGTA
CGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTATCACCACA
TCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGATTGAACAG
GTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATTGGTGGTGA
TCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACACACGCCGA
ATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATCTGCATAGC
ACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTTCTGTTGGA
ACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAATCGCGCCCA
ACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGGACATTGAC
CCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTACTATGCAAT
GGATACCATCGACCGGGTGGGCGTGCCCAAGATTATCGAGATGACGCTGG
ACGCCCTTAATCCGCAGACAAGATCCACGTCAGCTTGACATCGACGCTTG
GACAGCATGTGCGCTAGCACTGCACGCGTGCGCGTGCTCACGCTCGCGAG
GATCACTCGTGAGCCTCGGAACAGCGGTGAGGCGCACTGTGAATCACCAA
GTAGACAGGGCTGGACATGGATCGCTGAAATGAACTGCGTACGGTCGGCT
GCACACGACTGACAGACTCACTCTGCCGCAGTGCATATACATACTCAACG
TAAGGTCAAACGGAGCACAGTAGTGCAGAGAACCGCATTATCGCAGACGT
CGTCGGATTACGACAGCTAGATG
UFO01989.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arg-RA | 1243 | CG18104-RA | 78..933 | 9..851 | 3965 | 98.5 | Plus |
| elav-RD | 10506 | CG4262-RD | 9627..9832 | 418..213 | 1030 | 100 | Minus |
| elav-RD | 10506 | CG4262-RD | 10025..10229 | 213..9 | 1025 | 100 | Minus |
| elav-RD | 10506 | CG4262-RD | 9380..9567 | 604..417 | 940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 509909..510114 | 213..418 | 1030 | 100 | Plus |
| X | 23542271 | X | 509512..509716 | 9..213 | 1025 | 100 | Plus |
| X | 23542271 | X | 510174..510361 | 417..604 | 940 | 100 | Plus |
| X | 23542271 | X | 526501..526601 | 604..704 | 505 | 100 | Plus |
| X | 23542271 | X | 527559..527664 | 705..807 | 380 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:02 has no hits.
UFO01989.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:49 Download gff for
UFO01989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arg-RA | 87..929 | 1..834 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:37 Download gff for
UFO01989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arg-RA | 87..929 | 1..834 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:37 Download gff for
UFO01989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arg-RA | 70..912 | 1..834 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:37 Download gff for
UFO01989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 509504..509716 | 1..213 | 98 | -> | Plus |
| X | 509910..510113 | 214..417 | 100 | -> | Plus |
| X | 510175..510361 | 418..604 | 100 | -> | Plus |
| X | 526502..526601 | 605..704 | 100 | -> | Plus |
| X | 527559..527697 | 705..834 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:37 Download gff for
UFO01989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 403537..403749 | 1..213 | 98 | -> | Plus |
| arm_X | 403943..404146 | 214..417 | 100 | -> | Plus |
| arm_X | 404208..404394 | 418..604 | 100 | -> | Plus |
| arm_X | 420535..420634 | 605..704 | 100 | -> | Plus |
| arm_X | 421592..421730 | 705..834 | 93 | == | Plus |
