UFO01990.5prime Sequence
1073 bp (925 high quality bases) assembled on 2008-11-05
> UFO01990.5prime
CAGTCGACATGTTCGTGGCCCGTAAAATTTCGCAAACTGCAAGCCTGGCG
GTGCGTGGCAAGCACACCCTACCGAAGCTGCCCTACGACTATGCCGCCCT
GGAGCCTATCATCTGCCGGGAGATCATGGAGCTGCATCACCAGAAGCACC
ACCAGACCTACGTCAACAATCTAAATGCCGCCGAGGAGCAGCTGGAGGAG
GCCAAGTCGAAGAGCGACACCACCAAGCTGATTCAGCTGGCTCCTGCCCT
GCGTTTCAATGGCGGTGGCCACATCAACCACACCATCTTCTGGCAGAACC
TCTCGCCCAACAAGACCCAGCCCAGCGATGATCTGAAGAAGGCCATCGAG
TCGCAGTGGAAGAGCCTCGAGGAGTTCAAAAAGGAGCTGACCACGCTGAC
CGTGGCGGTCCAGGGCTCCGGCTGGGGCTGGCTGGGCTTCAACAAGAAGT
CGGGCAAACTGCAACTGGCCGCCCTGCCCAACCAGGATCCCCTGGAGGCC
TCCACCGGCCTGATCCCGCTCTTCGGCATCGATGTCTGGGAGCACGCCTA
CTATCTGCAGTACAAGAACGTGCGTCCCTCCTACGTGGAGGCCATCTGGG
ACATCGCCAACTGGGATGACATCTCGTGCCGCTTCCAGGAGGCCAAGAAG
CTCGGTTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCAGATGAGTCTGAGTCATACTGAT
CTATCACAGGATCAGCGAGCTCGTATCAATACGCCCGCCTGCATCATCGA
GACTGTGATCATACATCTGCGACTGAGCTCCAACGCTGTGACTGATCCCG
GTCGACTGCCTGTAATGCTGGACGGCAAATGCATGCTACATGATCCGTGG
AAATCACTGACGTCACCTGATGACGACGTCAGATTCAGGACCCCTCAATC
GAGAGTCACGAGTAGTCAATTGA
UFO01990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod2-RB | 1015 | CG8905-RB | 127..777 | 9..659 | 3255 | 100 | Plus |
| Sod2-RA | 884 | CG8905-RA | 127..777 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16773023..16773640 | 659..42 | 3090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:34 has no hits.
UFO01990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:47 Download gff for
UFO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 113..775 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:40 Download gff for
UFO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 120..782 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:11 Download gff for
UFO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod2-RA | 120..782 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:11 Download gff for
UFO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16773018..16773638 | 44..665 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:40 Download gff for
UFO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12660523..12661143 | 44..665 | 99 | <- | Minus |
