UFO01992.5prime Sequence
796 bp (481 high quality bases) assembled on 2008-11-05
> UFO01992.5prime
CAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCATCGAGACG
CATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGGGGTTATGT
GGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCTGGCGCTGC
ATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGCCCCTGCTA
CCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCACGGATACTC
CTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTACCTGTGCG
TGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGTCCCTGATG
GCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCGCTGTACCC
ACATCGCACCGACATGTTGGGTCAGCATAGATATAGTGAAAAACCGCTAT
AGGAAGCCCCCCCTCGCAAAATCGACTATCTGCCCCAAGAACATCGAGGG
CTACATTGGGGGAGGGACGAGCGATTTGCGAAATTCCAGCGCCAGGACCG
GCCGGCTATACCTACACAGAGATGGGAGCAGGTCCTTGACAAAAGGCCCA
CTTACTCCGGGGGAGACTGGGAAAACTGGCCGCCCATTCCTGGAACCGAA
CACTTCGCCCTTTCACCCAAGTTCCCGGCCAAGTTTTTTCTTTTCCCGCG
GACGGTCGCTTGAAGAAATACGTCTCACCTCCTATGCGCTAAGCAGGAGC
ACAATAACAGAGTGCCGACGTACAGGCCTCAAGAGGCTATTGCCCT
UFO01992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1533 | CG5707-RA | 232..919 | 9..710 | 2620 | 93.6 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 464..1100 | 60..710 | 2365 | 93.1 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 227..863 | 60..710 | 2365 | 93.1 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 232..282 | 9..59 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189883..2190413 | 593..57 | 2130 | 96.1 | Minus |
| 3L | 28110227 | 3L | 2191939..2191990 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:11 has no hits.
UFO01992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:46 Download gff for
UFO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 191..752 | 9..575 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:51 Download gff for
UFO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..793 | 9..575 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:10 Download gff for
UFO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..793 | 9..575 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:10 Download gff for
UFO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189900..2190410 | 60..575 | 96 | <- | Minus |
| 3L | 2191940..2191990 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:51 Download gff for
UFO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189900..2190410 | 60..575 | 96 | <- | Minus |
| arm_3L | 2191940..2191990 | 9..59 | 100 | | Minus |
