UFO01996.5prime Sequence
898 bp (783 high quality bases) assembled on 2008-11-05
> UFO01996.5prime
CAGTCGACATGAAGAAAAAGCAGGTGGAAAGTGCATCCGAGGAGGAGGAA
GTGCAGTCCGAAAACTCCGAGGCTTCCGACGAGGAGGAGCTACAGGCAGA
GGACTCCGACGAGGACCAGCTGCAGGCGGACGACTCCGAAGACGAAGATT
CCGATGGATCCGAACTGGATCTGGACGCCAGTGACACCGAATCCGATGAA
GATGATGGTGAGGAGGAAGATACAATCAAACCGCAGCCCAAAAGCCGTGC
CGAGATTATCGACGAGAAGATCCACACCAAGTACGAGCAGTTAAAGGGCA
CCCGGCTGTATGTCCGGTTTCCCCAAAAACTGCCCCTGGACTTGGATGAA
TTCAATGCCAAGGTGAAGGCTCTGCATCCACTGGTTCTGAAGTCCACAAA
GCCTCGCCAGAAGCATGCACGTTTCTGCCTCGTCGATTTCAAGTCGAAGG
AAGATCGCGATCAAGCCTTTAAGGATATCAAGGCTTCGATCGAAAAGGAT
GACAAGCACAAGGGCTTATTCGTATCACTGCCTAAGACGGATTCCGATGA
TTTTGTCAACGAGCTGGTGACCCGCAAGCAGACATCCATCGTAAACAAAC
GTACCAAGGCCCTGATGAAGCGTGCTACTAAGAAGGTCCTCACCAAGGGT
AACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAAAGACCAGTTCGTT
GCCCCAGGTGCGCCAGCTGTTCCACGACAGCATGAATCAATCACGGCAGG
AATCGGATAACCGCACGACTCACACCAGAGAGCTAGATACGTGCCTATGT
CACCAACGCAACAGAGAGCAACGAAACAGTAAACAACAACAATTATCTTG
AATGTGTTCTTGCTATTGCATGTGGTCGTGTTATGGCTATGTTCGTCG
UFO01996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 79..800 | 7..728 | 3610 | 100 | Plus |
| CG18178-RA | 1310 | CG18178-RA | 111..832 | 7..728 | 3610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9718264..9718985 | 728..7 | 3610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:29 has no hits.
UFO01996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:53 Download gff for
UFO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 75..803 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:52 Download gff for
UFO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 104..832 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:41 Download gff for
UFO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 104..832 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:41 Download gff for
UFO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9718264..9718992 | 1..728 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:52 Download gff for
UFO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9711364..9712092 | 1..728 | 99 | | Minus |
