UFO02001.5prime Sequence
839 bp (818 high quality bases) assembled on 2008-12-15
> UFO02001.5prime
CAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATGATGCGGAT
CGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCCAGGGAGTT
GGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGTCGGCGAGT
CGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTGACATTCAC
GGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGTTCGGTGCA
GGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGGCAAGAACA
GCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGACATCCGGCA
CAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCCACTCGATC
CTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGCGAATGTCT
GGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGGCTATCATT
GATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGATATGCAACG
ATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACCCGAAAGTG
GAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGCCTGGATGG
GCGGCATCGCCACGAGGACATGGAAAACCCTTCGGTGGCGATGTTTGTTG
AGGAGTTTACGCGCGCAAAATGGAATCTCTCTCATATGCCGCGCTCATCA
AGTTGGCCCCAGGATGGCTTCCGTTGGCATTTTGGGCCAACTTTCTTGTT
ACCATAATGGTCAGCACCCCAACTATTGCTATCGCTGCC
UFO02001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11597-RC | 1806 | CG11597-RC | 712..1533 | 9..838 | 3935 | 98.9 | Plus |
| CG11597-RB | 1686 | CG11597-RB | 592..1413 | 9..838 | 3935 | 98.9 | Plus |
| CG11597-RA | 1449 | CG11597-RA | 355..1176 | 9..838 | 3935 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11820611..11821432 | 838..9 | 3735 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:41 has no hits.
UFO02001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:47 Download gff for
UFO02001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11597-RB | 566..1395 | 1..839 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:16 Download gff for
UFO02001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11597-RA | 329..1158 | 1..839 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:01 Download gff for
UFO02001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11597-RA | 347..1176 | 1..839 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:01 Download gff for
UFO02001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11820610..11821438 | 1..839 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:16 Download gff for
UFO02001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11813710..11814538 | 1..839 | 98 | | Minus |
