UFO02002.5prime Sequence
1116 bp (1006 high quality bases) assembled on 2008-12-15
> UFO02002.5prime
CAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCCGCCAGCTG
GCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCCGCCGTCCA
CACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGGCTGGAACG
GCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCGCCGTGCGC
TTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAGGAGCAGGG
AGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTACCGCGCCA
GCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGGAGTGGAAG
CTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATCTGGGTGGC
CGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTACCTTCGACG
AGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGGAAATCAAC
CCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAGAAGTGGAA
GAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
CCACCTTGTCGCCTTGCGTATTAATATTTGCCCATGGTTGAAAACGGGGG
GCGAAGAAGTTGTCCATTATTGGCCACGTTAAATCAAAACTGGGTGAAAC
TCCACCCAAGGGATTGCTGTAAACGAAAAAACATTATTCTCATAAAACCC
TTAGGGAATAGGGCAAGTTTTCACCGTAACACGCCCAATCTTGGCGAAAT
ATGTGTAGAAACTGCC
UFO02002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoIV-RD | 1114 | CG10664-RD | 449..994 | 9..554 | 2715 | 99.8 | Plus |
| CoIV-RC | 818 | CG10664-RC | 92..637 | 9..554 | 2715 | 99.8 | Plus |
| CoIV-RB | 796 | CG10664-RB | 70..615 | 9..554 | 2715 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19959280..19959691 | 9..420 | 2060 | 100 | Plus |
| 2L | 23513712 | 2L | 19959750..19959884 | 420..554 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:10:59 has no hits.
UFO02002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:45 Download gff for
UFO02002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10664-RB | 41..595 | 2..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:20 Download gff for
UFO02002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoIV-RB | 65..619 | 2..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:37 Download gff for
UFO02002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoIV-RB | 65..619 | 2..559 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:37 Download gff for
UFO02002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19959275..19959691 | 2..420 | 99 | -> | Plus |
| 2L | 19959751..19959884 | 421..554 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:20 Download gff for
UFO02002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19959275..19959691 | 2..420 | 99 | -> | Plus |
| arm_2L | 19959751..19959884 | 421..554 | 99 | == | Plus |
