UFO02003.5prime Sequence
1140 bp (995 high quality bases) assembled on 2008-12-15
> UFO02003.5prime
CAGTCGACATGGATCACGAATACGTTGGGGTTAGCCCGCTGGGCGCAGCG
GACGGCAAGGGCGCCGGATCGAACGCCGTCATCCTGTGCTGCGAGTGCGG
AGTGGCCATCCAGCCGAATCCGGCCAACATGTGCGTCACCTGCCTGCGCA
ACCATGTCGACATCACGGAGAACATCCCAAAGCAGGCCGTGCTCCACTTC
TGTCGTAATTGCGAGCGCTATCTGCAACCGCCGAACGAGTGGATACAGGC
CGCCTTGGAGTCCCGCGAACTCTTGGCCATTTGCCTTAAGAAGCTAAAAG
GCCTGAAGGAAGTGAAGTTGGTGGATGCCGGCTTCATCTGGACAGAACAG
CACTCCAAGCGCATAAAGGTGAAGCTGACTGTGCATGGGGAGATCATCGG
GGGAACGATGCTCCAGCAGGTATTCGTGGTGGAGTTCACTGTGCAGAACC
AGATGTGCAACGACTGCCATCGGACCGAGGCCAAGGACTTCTGGCGCTGC
CTCGTGCAGGTTCGTCAGCGGGCCGAGAACAAGAAAACCTTTTACTATCT
GGAACAGCTGATCCTTAAGCACAAAGCCCACGAGAACACTCTGGGCATAA
AGCCGGAGCATGGCGGCCTGGATTTCTTCTATGCCAATGATAATCATGCC
CGGCGCATGGTTGATTTCCTCCTGACCATGGTGCCCGGCAAGGTAACAAC
CTCGAAGCGTCTCATCTCTCACGACATCCACAGCAACAACTATAAACTAC
AAGTACAAACTGGTCAGTGGAAAATAGCACCAGTATCGAAGGACAGTGCA
GTTTTGCCTGTCCAAAAAGCTGCGCCACCAGCTGGGAAATCCTCTCGCCA
TTGGTTTCTGGTCAACCGGGTGTCTAGCAGCATTCAACTTGATTGATCCC
CTGACCGGCACAGATTGCAGAACTCACTCGCAGTCTATTTCAGAGCTCCC
TTTGAAGCCGTCTGCAATCCCAAGCAGCTGGTTGAGTACGTCGTTCATGG
ACATTGAATGTGAATCATGGAAAAGATCGAAGACCTATCCTGTCAGGGCA
AGTTTCCTTCAAGCAGCCTCTCTGCGACATTTGGGTGGTGGCGCTCGGAC
TGGCATCAACGGATTATCAATCAACCAGCCTTCCAATTGG
UFO02003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-RA | 1791 | CG3460-RA | 130..1232 | 8..1111 | 4985 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2183628..2184539 | 927..8 | 4200 | 99.1 | Minus |
| X | 23542271 | X | 2183402..2183555 | 1090..938 | 380 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:22 has no hits.
UFO02003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:43 Download gff for
UFO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 112..1216 | 8..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:25 Download gff for
UFO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 130..1234 | 8..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:08 Download gff for
UFO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 130..1234 | 8..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:08 Download gff for
UFO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2183375..2183549 | 944..1114 | 91 | <- | Minus |
| X | 2183610..2184539 | 8..943 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:25 Download gff for
UFO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2077408..2077582 | 944..1114 | 91 | <- | Minus |
| arm_X | 2077643..2078572 | 8..943 | 98 | | Minus |
