UFO02004.5prime Sequence
1130 bp (1036 high quality bases) assembled on 2008-12-15
> UFO02004.5prime
CAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAACCGACAGCA
GCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACGAGCACCTC
GACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACACATCCTCGT
CGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGGGCATGTCC
GCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGACTATGTGCT
ACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGTGTCCTGTC
GCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGGCGAATATC
CGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTCCCGTGCAA
GCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGAAAAGACAG
AACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGTGCCCGGGC
GCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAGCATCTGAT
GATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACATCGTGTTCC
TGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAATGATGCAG
TCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAGTA
CGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGGGTCGCGCA
AGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAAACCGACGC
CGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGCGTCGCTTC
CGCAATTCACACTCGGACTGCCTGGTGTTCGACACGTCGATTGCGCAATT
GTTCGCCGACATGGCAACCTGGCATTAACGTGACCATATCTCTGGTCGCA
AGCTTTCTAGACAATCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATATC
ATAATCATAATCATAATCATATCACACTAGGCTAGGAGAATCTGTCATGA
CTAGTGCTTGATTCTCCACATAAAACGCCGGCGGCACGAGCGTTCTGACA
TCGATGGATCTGAGTCTTACTGACTTAACC
UFO02004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sina-RC | 3124 | CG9949-RC | 830..1771 | 9..947 | 4635 | 99.7 | Plus |
| sina-RB | 2482 | CG9949-RB | 188..1129 | 9..947 | 4635 | 99.7 | Plus |
| sina-RA | 3191 | CG9949-RA | 897..1838 | 9..947 | 4635 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16856418..16857359 | 9..947 | 4560 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 121..8 | 133 | 63 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 41..98 | 126 | 72.1 | Plus |
UFO02004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:41 Download gff for
UFO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RB | 181..1132 | 1..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:54 Download gff for
UFO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 890..1841 | 1..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:23 Download gff for
UFO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 890..1841 | 1..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:23 Download gff for
UFO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16856411..16857369 | 1..960 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:54 Download gff for
UFO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16849511..16850469 | 1..960 | 98 | -> | Plus |
