UFO02008.5prime Sequence
1067 bp (941 high quality bases) assembled on 2008-12-15
> UFO02008.5prime
CAGTCGACATGTTTTGGCCGAGATTTGCGCCCGTTGAGGTTATGGTTGAG
CTGGAGTTCGGCAGCGGTTTTGAGGAGATGCACGAACAGATGTCCGGCTA
CAAGCGGATGCGGCGCGAGCACCAGGCGCACCTGGTCAAACTGGAGGAGA
AGTGCAAGGTGGACATGGAGGCGCACAAGACGGCCCTGGACAAGGAGTAT
GACACGCTGCTCCACAACTTTACGAGGGACCTCGATCGGCTTGAGACGAA
GCATCAGCAGGATGTGGAGAGGCGCGCTAAGCAAACGAGCGCCGCCGAGA
AGAAACTACACAAAGAGATTACGCTAAAGCAGGAGAACGATCGCAAGGTG
TACGACCTGAACCGCAAGAAGGAGTACAAGGCGAACAAGGAGCGCTGGAA
GCGGGAGCTCTCCATGGATGAGTCGACGCCCAAGCGGCAGCGCGATCTTA
CCCTGCAATCGCAGAAGGACAACCTCAAGCAGCACGAGGCGCAGGAGGAG
CAGCGCATGCTCCAGGCCCAGAAGCAGTACATCGAGCTGGAGATGCGCAA
GTTCAAGCGCAAACGGATGATCATGCAGCACGAGCACGAGGATCAGCAGC
TGCGCGACGAGCTCGGAAAGAAGGAGCAGCAACTGCAGCAGGCACACGCC
ATGCTTCTTAAGCACCACGAAAAGACACAGGAGCTGGAGTACCGCCAGCA
GAAGAGCGTGCACCAGTTGCGCGAGGAGCAGATAAACAAGCAACACGATA
CCGAGTTGCATAATCAAAAGACTACATGGACCGCATCAAGAAGGAGCTGG
TACGCAAGCATGCGGTTGAGCTGACGCACAGCCGAGAGCTTGAAGCAAAC
GGAGCTCCAGATACGCAGCAGTTCCGGGAAACATGCAGGACGCAGACGAA
GCAATACAACGCTACATGCCCAAGTACTGCAGACGACCCAAAGGAGCACA
TGATGATGTCATTAAGCACTGAGTATGAAAGCATCGCAGCTGACGCTGCT
CGGTGACAGTACGAGCAGCATTGCGGACTGTTCAGTCAGGCTCAACTAAC
GAAGGCAGTGATGAGTG
UFO02008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tao-RG | 2621 | CG14217-RG | 209..1249 | 9..1033 | 4665 | 97.5 | Plus |
| Tao-RA | 2099 | CG14217-RA | 209..1249 | 9..1033 | 4665 | 97.5 | Plus |
| Tao-RI | 4230 | CG14217-RI | 2403..3380 | 72..1033 | 4350 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19572865..19573230 | 609..244 | 1830 | 100 | Minus |
| X | 23542271 | X | 19573291..19573464 | 245..72 | 870 | 100 | Minus |
| X | 23542271 | X | 19572678..19572800 | 731..609 | 615 | 100 | Minus |
| X | 23542271 | X | 19572516..19572617 | 828..728 | 445 | 98 | Minus |
| X | 23542271 | X | 19573603..19573666 | 72..9 | 320 | 100 | Minus |
| X | 23542271 | X | 19572319..19572427 | 948..844 | 300 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:41 has no hits.
UFO02008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:37 Download gff for
UFO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-1-RA | 172..1231 | 1..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:49 Download gff for
UFO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RA | 172..1231 | 1..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:20 Download gff for
UFO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RA | 203..1262 | 1..1042 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:20 Download gff for
UFO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19572497..19572613 | 732..845 | 96 | <- | Minus |
| X | 19572678..19572800 | 609..731 | 100 | <- | Minus |
| X | 19572866..19573228 | 246..608 | 100 | <- | Minus |
| X | 19573291..19573464 | 72..245 | 100 | <- | Minus |
| X | 19573604..19573671 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:49 Download gff for
UFO02008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19466530..19466646 | 732..845 | 96 | <- | Minus |
| arm_X | 19466711..19466833 | 609..731 | 100 | <- | Minus |
| arm_X | 19466899..19467261 | 246..608 | 100 | <- | Minus |
| arm_X | 19467324..19467497 | 72..245 | 100 | <- | Minus |
| arm_X | 19467637..19467704 | 1..71 | 94 | | Minus |
