UFO02009.5prime Sequence
1136 bp (1025 high quality bases) assembled on 2008-12-15
> UFO02009.5prime
CAGTCGACATGTGGCCGCGATTTGGCATTAAGATTGGCAACAGCACGCTT
TGCATCGCCCATGTGCGCGCGGATGGCAAGGCGGAGGTGATCGCCAACAA
ACAGGGCGACCGAGTGTCCCAAGCGTGCCTTCTCTGGGACGGAGCCTCGG
AGATCGAATGTGGCCTCACGGCCAAGCAGAAGATGGCCAACCGTCCGCGC
CAGGCGGTGGCGCACAGCTTTCAGTTGCTTCAGCCCAAGGAAGAGCTCAC
GGAGGAGAAACTGTCCAGTGCGCTGCGTGAAATACCCTGCGACTTTGACA
AGGAGGAGCTGGTGTTCCGGATGGAGCACACTGTACCCTCCGACAGGGAG
GACCAAGACGATAGAGTTGTGACCAAGGACCTCAGCGCCTATCAGGTGAC
GGTGGAGCTGCTGCGCGCTGAGCTGGAGCTGGCCCATCAATATCACACGG
ACGGGGAGCAGGCGCCCATTGCCGTGCTATCCATACCCAGCTACTATCCC
GCCTCGGCCTACAAACTGCTAGCAGATGCCGCTCAAACCGCTGGCTTCCA
TGTGGCCCAGATTATAACCGAACCCACGGCCGCCGTTCTAGGCTATAGCA
TCGGCGAGGAGCAGACGGAACAGCGCCGCCATGTGCTGACAATCAAATGC
GGTGGCTTATATAGCGACATCGCATTCTACTCCGTCCAAAATGGCCTGTT
CGTTCAGCTGGCCACTTTCGGACCCTTCCCCATCGGTGGCCGGCAATTCA
CCGAGGCCTTGGTGCAGTTTATTTGCGAGGAGTTCCGTCGCAAGTACAAG
CTAGATCCGCATGAGTCTCGCCGCTCAGTGGCCCAAAATACGCACTGCCG
CCGCCAATTGCAAACACATCCTGACCACGATGCCTTCCACGCAACTTTAT
ATCGACTCCCTGATGGACGGCGTTGATTACATGCCCAGATGTCGCGTGCT
CGCTCGAGAGCCTCATACAGCCAGTGATCAATAATCTCATCCAGCAGCTA
GGCGAGGGGTGGTGGAGCAGGCGCAAAGGACCATCCCGGATGGAGTAAAT
AGATGACATCGTTCTACTAGGCGCCCATTGCAATCCCCAAGCTCAGGCGG
CATGGGGCCGCCTTCCGGATGCCAGTCCCCACAGCA
UFO02009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-RB | 1962 | CG7182-RB | 314..1436 | 9..1124 | 5185 | 98.1 | Plus |
| CG7182-RA | 1786 | CG7182-RA | 138..1260 | 9..1124 | 5185 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8345002..8346069 | 1075..9 | 4950 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:37 has no hits.
UFO02009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:35 Download gff for
UFO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 262..1375 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:09 Download gff for
UFO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 138..1251 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:07 Download gff for
UFO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 138..1251 | 9..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:07 Download gff for
UFO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8344956..8346069 | 9..1116 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:09 Download gff for
UFO02009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8338056..8339169 | 9..1116 | 98 | | Minus |
