UFO02010.5prime Sequence
1095 bp (972 high quality bases) assembled on 2008-12-15
> UFO02010.5prime
CAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTTCCGGCTGT
GGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTACGCCAACA
CGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGCCGGTGCCT
TGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCATGGCCGGG
GATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTGGGCGCCTT
CAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCATGCGAAGTT
GGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTCATATTTCC
CTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAGTTCAGCTC
CCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCATTCCCGGAC
TGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATATGGATGGG
GCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTCACCGTAAG
TCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAACCCCCATC
TGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGATTGTCCAGG
CGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGGGCGGATTT
CATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCAATTTCTGC
GCAGGAATAGCCTACTCAATGAGGGTTTCAGATCCAGGAGAAGGGCATGA
TCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAGGAGCTGCGGGAGACC
CAAGGATCTTGAGAAGGTGCACACAAATCGCATGACTACAAACAATGTGC
AGCACAAGAAGCGAAGGAATCGAAAACAGAGGACTCAAGACAAACTCCTG
CAAGGACTAGAAAAACCAGCAGAAGATCAGGGACGGAAGGAGTTTAGAAT
TGGAATCAGAATCAGAAAAAACCACAGAGCCCCACGCAGCGTGAGAAATC
TGAACCCGATCGCGAGAAACGTCTGAAAAATAGCACAAGGACCAT
UFO02010.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dob-RA | 1855 | CG5560-RA | 187..1280 | 9..1083 | 4810 | 97.1 | Plus |
| bmm-RB | 2301 | CG5295-RB | 641..899 | 333..591 | 305 | 75.5 | Plus |
| bmm-RA | 2437 | CG5295-RA | 641..899 | 333..591 | 305 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15067193..15067659 | 9..475 | 2335 | 100 | Plus |
| X | 23542271 | X | 15067885..15068426 | 471..1004 | 2280 | 96.9 | Plus |
| 3L | 28110227 | 3L | 14778618..14778876 | 591..333 | 290 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:02 has no hits.
UFO02010.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:50 Download gff for
UFO02010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 191..1189 | 9..999 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:23 Download gff for
UFO02010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 187..1185 | 9..999 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:38 Download gff for
UFO02010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 187..1185 | 9..999 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:38 Download gff for
UFO02010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15067193..15067657 | 9..473 | 100 | -> | Plus |
| X | 15067888..15068438 | 474..1015 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:23 Download gff for
UFO02010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14961226..14961690 | 9..473 | 100 | -> | Plus |
| arm_X | 14961921..14962471 | 474..1015 | 97 | -> | Plus |
