UFO02011.5prime Sequence
1148 bp (1012 high quality bases) assembled on 2008-12-15
> UFO02011.5prime
CAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGGGTCAACGC
ATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCAACGGGATT
CCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGACCTGGAAC
AAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACTATCGTCGC
TACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTACTAGTGCC
TGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAGCTACTGCA
TCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATGAGCAGGTA
TTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATGTTCGAAGA
GGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCCTAGTGAAC
GCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACGGTTCTGTA
CCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATCAAGGATGG
CATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAAGCAAGAGA
AGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGACTGGAAAAG
CAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAATATTTTA
AACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCTACATAAG
GCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCATGCGCTCATCGA
TGATATCACCGATGAGAAGCCATATATTGAGATAACCTCAGACATTAAGA
CTTCTCGCAGCGCCCAACATTCCCGATCATGAAATAATTGTTAATTATTT
TGGTCCACCATCATGTCATTGGGCGAATGGAACAAGAAGGAGGAGCTTGG
TTACCGATCAGGCTGTTCGTCTCCTGAAAGAACTACTGCCCCACTGTTGC
AGGCTTTTCGCCTCCGACCGACCGGTTCGGAAATTGGCCCTATCCTTGAG
GGCAAGAAATTCTGCTACGAGACATGAACTTTCATGAAGGCCTTCCGAAA
AATCATTTGTTGTCTCTACAAAGACCGAGGTCCTGTCGAGGGAATTCA
UFO02011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-RE | 1701 | CG2922-RE | 221..1341 | 9..1137 | 5025 | 97.4 | Plus |
| kra-RB | 1847 | CG2922-RB | 367..1487 | 9..1137 | 5025 | 97.4 | Plus |
| kra-RD | 2026 | CG2922-RD | 546..1666 | 9..1137 | 5025 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5599116..5599353 | 246..9 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 5597274..5597515 | 893..654 | 1065 | 97.9 | Minus |
| 3R | 32079331 | 3R | 5597776..5597939 | 648..485 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5598204..5598345 | 486..345 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 5598942..5599046 | 349..245 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 5596971..5597202 | 1137..899 | 435 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:07 has no hits.
UFO02011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:49 Download gff for
UFO02011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RC | 601..1731 | 9..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:57 Download gff for
UFO02011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RD | 546..1676 | 9..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:36 Download gff for
UFO02011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kra-RD | 546..1676 | 9..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:36 Download gff for
UFO02011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5599116..5599353 | 9..246 | 100 | | Minus |
| 3R | 5597272..5597515 | 654..896 | 97 | <- | Minus |
| 3R | 5597772..5597937 | 487..653 | 99 | <- | Minus |
| 3R | 5598204..5598342 | 348..486 | 100 | <- | Minus |
| 3R | 5598944..5599044 | 247..347 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:57 Download gff for
UFO02011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1422994..1423237 | 654..896 | 97 | <- | Minus |
| arm_3R | 1423494..1423659 | 487..653 | 99 | <- | Minus |
| arm_3R | 1424838..1425075 | 9..246 | 100 | | Minus |
| arm_3R | 1423926..1424064 | 348..486 | 100 | <- | Minus |
| arm_3R | 1424666..1424766 | 247..347 | 100 | <- | Minus |
