UFO02013.5prime Sequence
791 bp (726 high quality bases) assembled on 2008-12-15
> UFO02013.5prime
CAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGATGGCCGAG
GCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCGCTGTTCGG
AGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCGGGCGGGCA
ACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGTGCTTCTGC
GAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGATGCCGGAAC
CTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGTGGAGAGCG
CCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATATGGGCCGC
TTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATGTACGAAAG
TGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCAGGCGGCTG
ATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAATAAGTGCATGTTG
AAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAAGCAATATC
CATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCTGCTCAAGT
ACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATCTCAGCGTG
GACCTCCTGAACGCCCACATGCCATCGAAAAGTATGCGCAGCAGTACCCA
ACATTCCAGGACTCCAGGGAGTTCAAGATCATCAAGGTGTTGTGCGAGAA
TCCTAGAGGAACAGAACATTGAGGGATCACGAGGCTGTCAA
UFO02013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaSnap-RA | 2070 | CG6625-RA | 157..946 | 4..791 | 3780 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20314607..20314924 | 100..417 | 1590 | 100 | Plus |
| 3L | 28110227 | 3L | 20314982..20315306 | 416..739 | 1530 | 98.8 | Plus |
| 3L | 28110227 | 3L | 20313788..20313884 | 4..100 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:12 has no hits.
UFO02013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:28 Download gff for
UFO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap-RA | 153..942 | 1..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:46 Download gff for
UFO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap-RA | 155..944 | 1..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:47 Download gff for
UFO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaSnap-RA | 155..944 | 1..789 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:47 Download gff for
UFO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20313786..20313884 | 1..100 | 98 | -> | Plus |
| 3L | 20314608..20314923 | 101..416 | 100 | -> | Plus |
| 3L | 20314983..20315303 | 417..736 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:46 Download gff for
UFO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20306886..20306984 | 1..100 | 98 | -> | Plus |
| arm_3L | 20307708..20308023 | 101..416 | 100 | -> | Plus |
| arm_3L | 20308083..20308403 | 417..736 | 98 | -> | Plus |
